Publications: Prof Conrad Bessant

Branson N, Cutillas PR, Bessant C ( 2023 ) . Comparison of multiple modalities for drug response prediction with learning curves using neural networks and XGBoost . Bioinformatics Advances vol. 4 , ( 1 )

Saihi H, Bessant C, Alazawi W ( 2023 ) . Automated and reproducible cell identification in mass cytometry using neural networks . Briefings in Bioinformatics

Elder GA, Bessant C ( 2023 ) . Inferring Compensatory Kinase Networks in Yeast using Prolog . Electronic Proceedings in Theoretical Computer Science vol. 385 , 260 - 273 .

De Los Angeles Colomina Basanta C, Bazzi M, Hijazi M, Bessant C, Cutillas PR ( 2023 ) . Community detection in empirical kinase networks identifies new potential members of signalling pathways . PLOS Computational Biology vol. 19 , ( 6 )

Bessant C, Abdollahyan M, Smeraldi F ( 2023 ) . CO51 Understanding the Lived Experience of Patients By Mining Online Health Boards . Value in Health vol. 26 , ( 6 ) s23 - s24 .

Byrom B, Bessant C, Smeraldi F, Abdollahyan M, Bridges Y, Chowdhury M, Tahsin A ( 2023 ) . Deriving Meaningful Aspects of Health Related to Physical Activity in Chronic Disease: Concept Elicitation Using Machine Learning–Assisted Coding of Online Patient Conversations . Value in Health vol. 26 , ( 7 ) 1057 - 1066 .

Bessant C, Bridges Y, Chowdhury M, Tahsin A, Abdollahyan M, Smeraldi F, Byrom B ( 2022 ) . PCR3 Assessing Concept Saturation and Sample Representativeness When Using Social Media Data to Inform Concept Elicitation Studies . Value in Health vol. 25 , ( 12 )

Waller KJ, Saihi H, Li W, Brindley JH, De Jong A, Syn W-K, Bessant C, Alazawi W ( 2022 ) . Single-cell phenotypes of peripheral blood immune cells in early and late stages of non-alcoholic fatty liver disease . Clinical and Molecular Hepatology vol. 29 , ( 2 ) 417 - 432 .

Bridges Y, Chowdhury M, Tahsin A, Bessant C, Abdollahyan M, Smeraldi F, Byrom B ( 2022 ) . POSB338 Identification of Meaningful Aspects of Physical Activity: Concept Elicitation By AI-Assisted Coding of Online Patient Conversations . Value in Health vol. 25 , ( 1 )

Patel R, Smeraldi F, Abdollahyan M, Irving J, Bessant C ( 2021 ) . Analysis of mental and physical disorders associated with COVID-19 in online health forums: a natural language processing study . BMJ Open vol. 11 , ( 11 )

Gomez EA, Colas RA, Souza PR, Hands R, Lewis MJ, Bessant C, Pitzalis C, Dalli J ( 2020 ) . Blood pro-resolving mediators are linked with synovial pathology and are predictive of DMARD responsiveness in rheumatoid arthritis . Nature Communications vol. 11 , ( 1 )

Gadaleta E, Fourgoux P, Pirró S, Thorn GJ, Nelan R, Ironside A, Rajeeve V, Cutillas PR et al. ( 2020 ) . Characterization of four subtypes in morphologically normal tissue excised proximal and distal to breast cancer . npj Breast Cancer vol. 6 , ( 1 )

Gadaleta E, Fourgoux P, Pirró S, Thorn GJ, Nelan R, Ironside A, Rajeeve V, Cutillas PR et al. ( 2020 ) . Characterization of four subtypes in morphologically normal tissue excised proximal and distal to breast cancer . NPJ Breast Cancer vol. 6 , ( 1 )

Abdollahyan M, Smeraldi F, Patel R, Bessant C ( 2020 ) . Investigating Comorbidity of Mental and Physical Disorders in Online Health Forums . Conference: Proceedings of the 3rd International Conference on Applications of Intelligent Systems1 - 5 .

Hijazi M, Smith R, Rajeeve V, Bessant C, Cutillas PR ( 2020 ) . Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring . Nature Biotechnology

Cutillas PR, Hijazi M, Smith R, Bessant C, Britton D ( 2019 ) . Abstract C088: Chemical phosphoproteomics systematically identifies circuitries of kinase networks in cancer cells and predicts their response to kinase inhibitors . Molecular Cancer Therapeutics . vol. 18 , c088 - c088 .

Ruiz-Romero C, Picchi F, González-Rodríguez L, Fernández-Puente P, Hands R, Calamia V, Camacho-Encina M, Bessant C et al. ( 2018 ) . SAT0074 Identification of a protein panel useful for the prediction of response to methotrexate in rheumatoid arthritis patients . Annals of the Rheumatic Diseases . Conference: Saturday, 16 JUNE 2018 vol. 77 ,

Ruiz-Romero C, Picchi F, Fernández-Puente P, González-Rodríguez L, Hands R, Calamia V, Camacho-Encina M, Bessant C et al. ( 2018 ) . THU0052 A circulating protein signature correlates with synovial pathotypes in rheumatoid arthritis patients . Annals of the Rheumatic Diseases . Conference: THURSDAY, 14 JUNE 2018 vol. 77 ,

Saha S, Matthews DA, Bessant C ( 2018 ) . High throughput discovery of protein variants using proteomics informed by transcriptomics . Nucleic Acids Research vol. 46 , ( 10 )

Ruiz-Romero C, Picchi F, Fernandez P, Gonzalez L, Hands R, Calamia V, Camacho M, Bessant C et al. ( 2018 ) . Identification of a Panel of Circulating Proteins Associated to Synovial Pathotypes in Early Rheumatoid Arthritis Patients . ARTHRITIS & RHEUMATOLOGY . vol. 70 ,

Ruiz-Romero C, Picchi F, Gonzalez L, Hands R, Calamia V, Fernandez P, Camacho M, Paz R et al. ( 2018 ) . Identification of a Protein Profile Useful to Predict Response to Methotrexate in Early Rheumatoid Arthritis Patients . ARTHRITIS & RHEUMATOLOGY . vol. 70 ,

Abdollahyan M, Mondragón RJ, Bessant C, Smeraldi F ( 2018 ) . Visualising the topological structure of health-elated message board user networks . Frontiers in Artificial Intelligence and Applications . vol. 310 , 274 - 279 .

Pearce OMT, Delaine-Smith R, Maniati E, Nichols S, Wang J, Böhm S, Rajeeve V, Ullah D et al. ( 2017 ) . Deconstruction of a metastatic tumor microenvironment reveals a common matrix response in human cancers . Cancer Discov

SAHA S, Chatzimichali E, Matthews D, Bessant C ( 2017 ) . PITDB: a database of translated genomic elements . Nucleic Acids Research

Balkwill FR, Pearce OM, Delaine-Smith R, Maniati E, Nichols S, Wang J, Bessant C, Knight M ( 2017 ) . Abstract 5558: Deconstruction of a human tumor microenvironment . Cancer Research . vol. 77 , 5558 - 5558 .

Maringer K, Yousuf A, Heesom KJ, Fan J, Lee D, Fernandez-Sesma A, Bessant C, Matthews DA et al. ( 2017 ) . Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti . BMC Genomics vol. 18 , ( 1 ) 101 - 101 .

Bessant C ( 2017 ) . Acknowledgements . New Developments in Mass Spectrometry vol. 2017-January , ( 5 )

Bessant C ( 2016 ) . Chapter 1 Introduction to Proteome Informatics . Proteome Informatics , Royal Society of Chemistry (RSC)

Saha S, Matthews D, Bessant C ( 2016 ) . Chapter 16 Proteomics Informed by Transcriptomics . Proteome Informatics , Royal Society of Chemistry (RSC)

( 2016 ) . Proteome Informatics . Editors: Bessant, C , The Royal Society of Chemistry

Walton C, Montoya MPB, Fowler DP, Turner C, Jia W, Whitehead RN, Griffiths L, Waring RH et al. ( 2016 ) . Enteral feeding reduces metabolic activity of the intestinal microbiome in Crohn’s disease: an observational study . European Journal of Clinical Nutrition vol. 70 , 1052 - 1056 .

Mohareb F, Papadopoulou O, Panagou E, Nychas G-J, Bessant C ( 2016 ) . Ensemble-based support vector machine classifiers as an efficient tool for quality assessment of beef fillets from electronic nose data . Analytical Methods vol. 8 , ( 18 ) 3711 - 3721 .

Cauchi M, Weber CM, Bolt BJ, Spratt PB, Bessant C, Turner DC, Willis CM, Britton LE et al. ( 2016 ) . Evaluation of gas chromatography mass spectrometry and pattern recognition for the identification of bladder cancer from urine headspace . Analytical Methods vol. 8 , ( 20 ) 4037 - 4046 .

Chatzimichali EA, Bessant C ( 2015 ) . Novel application of heuristic optimisation enables the creation and thorough evaluation of robust support vector machine ensembles for machine learning applications . Metabolomics vol. 12 , ( 1 )

Qi D, Zhang H, Fan J, Perkins S, Pisconti A, Simpson DM, Bessant C, Hubbard S et al. ( 2015 ) . The mzqLibrary - An open source Java library supporting the HUPO-PSI quantitative proteomics standard . Proteomics vol. 15 , ( 18 ) 3152 - 3162 .

Fan J, Saha S, Barker G, Heesom KJ, Ghali F, Jones AR, Matthews DA, Bessant C ( 2015 ) . Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics*[S] . Molecular & Cellular Proteomics vol. 14 , ( 11 ) 3087 - 3093 .

Qi D, Zhang H, Fan J, Perkins S, Pisconti A, Simpson DM, Bessant C, Hubbard S et al. ( 2015 ) . The mzqLibrary – An open source Java library supporting the HUPO‐PSI quantitative proteomics standard . Proteomics vol. 15 , ( 18 ) 3152 - 3162 .

Cauchi M, Fowler DP, Walton C, Turner C, Waring RH, Ramsden DB, Hunter JO, Teale P et al. ( 2015 ) . Comparison of GC-MS, HPLC-MS and SIFT-MS in conjunction with multivariate classification for the diagnosis of Crohn's disease in urine . Analytical Methods vol. 7 , ( 19 ) 8379 - 8385 .

Gonzalez-Galarza FF, Qi D, Fan J, Bessant C, Jones AR ( 2014 ) . A tutorial for software development in quantitative proteomics using PSI standard formats . BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS vol. 1844 , ( 1 ) 88 - 97 .

Gonzalez-Galarza FF, Qi D, Fan J, Bessant C, Jones AR ( 2014 ) . A tutorial for software development in quantitative proteomics using PSI standard formats . Biochim Biophys Acta vol. 1844 , ( 1 Pt A ) 88 - 97 .

Cauchi M, Fowler DP, Walton C, Turner C, Jia W, Whitehead RN, Griffiths L, Dawson C et al. ( 2014 ) . Application of gas chromatography mass spectrometry (GC–MS) in conjunction with multivariate classification for the diagnosis of gastrointestinal diseases . Metabolomics vol. 10 , ( 6 ) 1113 - 1120 .

Bessant C, Oakley D, Shadforth I ( 2014 ) . Building Bioinformatics Solutions . Oxford University Press

Bessant C, Oakley D, Shadforth I ( 2014 ) . Building Bioinformatics Solutions 2nd Edition . Oxford University Press

Sattlecker M, Stone N, Bessant C ( 2014 ) . Current trends in machine-learning methods applied to spectroscopic cancer diagnosis . TrAC Trends in Analytical Chemistry vol. 59 , 17 - 25 .

Walton C, Fowler DP, Turner C, Jia W, Whitehead RN, Griffiths L, Dawson C, Waring RH et al. ( 2013 ) . Analysis of volatile organic compounds of bacterial origin in chronic gastrointestinal diseases . Inflamm Bowel Dis vol. 19 , ( 10 ) 2069 - 2078 .

Walzer M, Qi D, Mayer G, Uszkoreit J, Eisenacher M, Sachsenberg T, Gonzalez-Galarza FF, Fan J et al. ( 2013 ) . The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics . Mol Cell Proteomics vol. 12 , ( 8 ) 2332 - 2340 .

Bessant C, Fan J ( 2013 ) . Computational approaches to selected reaction monitoring assay design . Methods in Molecular Biology vol. 1007 , 219 - 235 .

Bessant C, Fan J ( 2013 ) . Computational approaches to selected reaction monitoring assay design . Methods Mol Biol vol. 1007 , 219 - 235 .

Evans VC, Barker G, Heesom KJ, Fan J, Bessant C, Matthews DA ( 2012 ) . De novo derivation of proteomes from transcriptomes for transcript and protein identification . Nat Methods vol. 9 , ( 12 ) 1207 - 1211 .

Gonzalez-Galarza FF, Lawless C, Hubbard SJ, Fan J, Bessant C, Hermjakob H, Jones AR ( 2012 ) . A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis . OMICS vol. 16 , ( 9 ) 431 - 442 .

Fan J, Mohareb F, Bond NJ, Lilley KS, Bessant C ( 2012 ) . MRMaid 2.0: mining PRIDE for evidence-based SRM transitions . OMICS vol. 16 , ( 9 ) 483 - 488 .

Jia W, Whitehead RN, Griffiths L, Dawson C, Bai H, Waring RH, Ramsden DB, Hunter JO et al. ( 2012 ) . Diversity and distribution of sulphate-reducing bacteria in human faeces from healthy subjects and patients with inflammatory bowel disease . FEMS Immunol Med Microbiol vol. 65 , ( 1 ) 55 - 68 .

Ikeno S, Sano K, Cauchi M, Takatsuji Y, Bessant C, Haruyama T ( 2012 ) . Colorimetric analysis of agonistic/antagonistic actions on estrogen receptor using peptide-functionalized gold nanoparticle sensor . Biosensors .

Fan J, Mohareb F, Jones AME, Bessant C ( 2012 ) . MRMaid: The SRM Assay Design Tool for Arabidopsis and Other Species . Front Plant Sci vol. 3 ,

Thiollet S, Bessant C, Morgan SL ( 2011 ) . Application of multiple response optimization design to quantum dot-encoded microsphere bioconjugates hybridization assay . Anal Biochem vol. 414 , ( 1 ) 23 - 30 .

Panagou EZ, Mohareb FR, Argyri AA, Bessant CM, Nychas G-JE ( 2011 ) . A comparison of artificial neural networks and partial least squares modelling for the rapid detection of the microbial spoilage of beef fillets based on Fourier transform infrared spectral fingerprints . Food Microbiol vol. 28 , ( 4 ) 782 - 790 .

Weber CM, Cauchi M, Patel M, Bessant C, Turner C, Britton LE, Willis CM ( 2011 ) . Evaluation of a gas sensor array and pattern recognition for the identification of bladder cancer from urine headspace . Analyst vol. 136 , ( 2 ) 359 - 364 .

Sattlecker M, Stone N, Smith J, Bessant C ( 2011 ) . Assessment of robustness and transferability of classification models built for cancer diagnostics using Raman spectroscopy . Journal of Raman Spectroscopy vol. 42 , Article 5 , 897 - 903 .

Johnson PE, Baumgartner S, Aldick T, Bessant C, Giosafatto V, Heick J, Mamone G, O'Connor G et al. ( 2011 ) . Current perspectives and recommendations for the development of mass spectrometry methods for the determination of allergens in foods . J AOAC Int vol. 94 , ( 4 ) 1026 - 1033 .

Bessant C ( 2011 ) . Data Mining for Genomics and Proteomics: Analysis of Gene and Protein Expression Data Darius M. Dziuda John Wiley and Sons, 2010, p. 327 ISBN: 978-0-470-16373-3 . Proteomics vol. 11 , Article 18 , 3768 - 3768 .

Bessant C ( 2011 ) . Experiences in Pattern Recognition for Machine Olfaction .

Sattlecker M, Baker R, Stone N, Bessant C ( 2011 ) . Support vector machine ensembles for breast cancer type prediction from mid-FTIR micro-calcification spectra . Chemometrics and Intelligent Laboratory Systems vol. 107 , Article 2 , 363 - 370 .

Cauchi M, Bianco L, Bessant C ( 2011 ) . The quantification of pollutants in drinking water by use of artificial neural networks . Nat. Comput. vol. 10 , Article 1 , 77 - 90 .

Kolk A, Hoelscher M, Maboko L, Jung J, Kuijper S, Cauchi M, Bessant C, van Beers S et al. ( 2010 ) . Electronic-nose technology using sputum samples in diagnosis of patients with tuberculosis . J Clin Microbiol vol. 48 , ( 11 ) 4235 - 4238 .

Sattlecker M, Bessant C, Smith J, Stone N ( 2010 ) . Investigation of support vector machines and Raman spectroscopy for lymph node diagnostics . Analyst vol. 135 , ( 5 ) 895 - 901 .

Cham Mead JA, Bianco L, Bessant C ( 2010 ) . Free computational resources for designing selected reaction monitoring transitions . Proteomics vol. 10 , ( 6 ) 1106 - 1126 .

Pagliarini R, Bianco L, Manca V, Bessant C ( 2010 ) . Linking Bistable Dynamics to Metabolic P Systems . Eighth Brainstorming Week on Membrane Computing . Conference: Eighth Brainstorming Week on Membrane Computing ( Universidad de Sevilla, Seville, Spain ) from: 01/02/2010 to: 05/02/2010 , 205 - 218 .

Jia W, Griffiths L, Whitehead B, Basser SJ, Dawson C, Turner C, Bessant C, Fowler D et al. ( 2010 ) . ABUNDANCE OF SULPHATE REDUCING BACTERIA IN INFLAMMATORY BOWEL DISEASE . GUT . vol. 59 , A97 - A98 .

Tetsuya H ( 2010 ) . Discerning data analysis methods to clarify agonistic/antagonistic actions on the ion flux assay of ligand-gated ionotropic glutamate receptor on engineered post-synapse model cells . Journal of Biosensors & Bioelectronics

Kolk A, Hoelscher M, Maboko L, Jung J, Kuijper S, Cauchi M, Bessant C, van Beers S et al. ( 2010 ) . Electronic-nose technology in diagnosis of TB patients using sputum samples . Journal of Clinical Microbiology

Cham JA, Bianco L, Barton C, Bessant C ( 2010 ) . MRMaid-DB: a repository of published SRM transitions . J Proteome Res vol. 9 , ( 1 ) 620 - 625 .

Chem Mead JA, Bianco L, Bessant C ( 2010 ) . Mining proteomic MS/MS data for MRM transitions . Methods Mol Biol vol. 604 , 187 - 199 .

Tanoue C, Asakawa H, Cauchi M, Bessant C, Ikeno S, Haruyama T ( 2010 ) . Tissular model/sensor seamless system for qualified analysis and its characterization . Biochemical Engineering Journal vol. 52 , Article 1 , 110 - 115 .

Spooner AD, Bessant C, Turner C, Knobloch H, Chambers M ( 2009 ) . Evaluation of a combination of SIFT-MS and multivariate data analysis for the diagnosis of Mycobacterium bovis in wild badgers . Analyst vol. 134 , ( 9 ) 1922 - 1927 .

Blanco L, Mead JA, Bessant C ( 2009 ) . Comparison of novel decoy database designs for optimizing protein identification searches using ABRF sPRG2006 standard MS/MS data sets . J Proteome Res vol. 8 , ( 4 ) 1782 - 1791 .

Babrah J, McCarthy K, Lush RJ, Rye AD, Bessant C, Stone N ( 2009 ) . Fourier transform infrared spectroscopic studies of T-cell lymphoma, B-cell lymphoid and myeloid leukaemia cell lines . Analyst vol. 134 , ( 4 ) 763 - 768 .

Mead JA, Bianco L, Ottone V, Barton C, Kay RG, Lilley KS, Bond NJ, Bessant C ( 2009 ) . MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions . Mol Cell Proteomics vol. 8 , ( 4 ) 696 - 705 .

Moczko E, Meglinski IV, Bessant C, Piletsky SA ( 2009 ) . Dyes assay for measuring physicochemical parameters . Anal Chem vol. 81 , ( 6 ) 2311 - 2316 .

Mead JA, Bianco L, Bessant C ( 2009 ) . Recent developments in public proteomic MS repositories and pipelines . Proteomics vol. 9 , ( 4 ) 861 - 881 .

Thanaraj T, Terry LA, Bessant C ( 2009 ) . Chemometric profiling of pre-climacteric Sri Lankan mango fruit (< i> Mangifera indica</i> L.) . Food Chemistry vol. 112 , Article 4 , 786 - 794 .

Monteiro MB, Pintado ME, Malcata FX, Bessant C, Moreira PR ( 2009 ) . Development of a Workflow for Protein Sequence Analysis Based on the Taverna Workbench Software . IWANN (2) . Editors: Omatu, S, Rocha, M, Bravo, J, Riverola, FF et al. , vol. 5518 , 1118 - 1124 .

Tottey S, Robinson N, Waldron K, Firbank S, Bessant C ( 2009 ) . Protein folding location determines binding of manganese versus copper . Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology vol. 153 , Article 2 , S159 - S159 .

Robinson N, Waldron K, Tottey S, Bessant C ( 2008 ) . Metalloprotein metal pools: identification and quantification by coupling native and non-native separations through principal component analysis . Protocol Exchange

Tottey S, Waldron KJ, Firbank SJ, Reale B, Bessant C, Sato K, Cheek TR, Gray J et al. ( 2008 ) . Protein-folding location can regulate manganese-binding versus copper- or zinc-binding . Nature vol. 455 , ( 7216 ) 1138 - 1142 .

Stott W, Ryan A, Jacobs IJ, Menon U, Bessant C, Jones C ( 2008 ) . OSPACS: Ultrasound image management system . Source Code Biol Med vol. 3 ,

Cauchi M, Bessant C, Setford S ( 2008 ) . Simultaneous Quantitative Determination of Cadmium, Lead, and Copper on Carbon-Ink Screen-Printed Electrodes by Differential Pulse Anodic Stripping Voltammetry and Partial Least Squares Regression . Electroanalysis vol. 20 , Article 23 , 2571 - 2577 .

Mead J, Bianco L, Bessant C ( 2008 ) . Using Bioinformatics to Increase Speed and Reduce Uncertainty in Protein Biomarker Discovery . Cranfield Multi-Strand Conference: Creating Wealth Through Research and Innovation vol. 6 , 118 - 118 .

Mead JA, Shadforth IP, Bessant C ( 2007 ) . Public proteomic MS repositories and pipelines: available tools and biological applications . Proteomics vol. 7 , ( 16 ) 2769 - 2786 .

Babrah J, McCarthy KP, Lush R, Rye AD, Bessant C, Stone N ( 2007 ) . FT-infrared spectroscopic studies of lymphoma, lymphoid, and myeloid leukemia cell lines . Proceedings of SPIE--the International Society for Optical Engineering . Conference: Diagnostic Optical Spectroscopy in Biomedicine IV vol. 6628 ,

Kumuthini J, Jouffe L, Bessant C ( 2007 ) . A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory Networks from Temporal Microarray Data . BIRD . Editors: Hochreiter, S, Wagner, R , vol. 4414 , 28 - 37 .

Babrah J, McCarthy KP, Lush R, Rye AD, Bessant C, Stone N ( 2007 ) . FT-infrared spectroscopic studies of lymphoma, lymphoid, and myeloid leukemia cell lines . European Conference on Biomedical Optics . 66280R - 66280R .

Babrah J, McCarthy KP, Lush R, Rye AD, Bessant C, Stone N ( 2007 ) . FT-infrared spectroscopic studies of lymphoma, lymphoid, and myeloid leukemia cell lines [6628-28] . PROCEEDINGS-SPIE THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING vol. 6628 , 6628 - 6628 .

Babrah J, Lush R, Rye A, McCarthy K, Bessant C, Stone N ( 2007 ) . Fourier transform infrared spectroscopic studies of lymphoma, lymphoid and myeloid leukaemia cell lines . BRITISH JOURNAL OF HAEMATOLOGY . vol. 137 , 4 - 4 .

Kumuthini J, Bessant C, Wilson P, Crowther D ( 2007 ) . Gene regulatory network of human adipocyte differentiation . BMC Systems Biology vol. 1 , Article Suppl 1 , P57 - P57 .

Bessant C ( 2007 ) . Microarray Analysis Software and its Applications . Handbook of Biosensors and Biochips

Goodacre R, Broadhurst D, Smilde AK, Kristal BS, Baker JD, Beger R, Bessant C, Connor S et al. ( 2007 ) . Proposed minimum reporting standards for data analysis in metabolomics . Metabolomics vol. 3 , Article 3 , 231 - 241 .

Kumuthini J, Jouffe L, Bessant C ( 2007 ) . Session 1-Microarray and Systems Biology I (Networks)-A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory Networks from Temporal Microarray Data . Lecture Notes in Computer Science vol. 4414 , 28 - 28 .

Shadforth I, Bessant C ( 2006 ) . Genome annotating proteomics pipelines: available tools . Expert Rev Proteomics vol. 3 , ( 6 ) 621 - 629 .

Shadforth I, Xu W, Crowther D, Bessant C ( 2006 ) . GAPP: a fully automated software for the confident identification of human peptides from tandem mass spectra . J Proteome Res vol. 5 , ( 10 ) 2849 - 2852 .

Ernst W, Trummer E, Mead J, Bessant C, Strelec H, Katinger H, Hesse F ( 2006 ) . Evaluation of a genomics platform for cross-species transcriptome analysis of recombinant CHO cells . Biotechnol J vol. 1 , ( 6 ) 639 - 650 .

Fend R, Kolk AHJ, Bessant C, Buijtels P, Klatser PR, Woodman AC ( 2006 ) . Prospects for clinical application of electronic-nose technology to early detection of Mycobacterium tuberculosis in culture and sputum . J Clin Microbiol vol. 44 , ( 6 ) 2039 - 2045 .

Dunkley TPJ, Hester S, Shadforth IP, Runions J, Weimar T, Hanton SL, Griffin JL, Bessant C et al. ( 2006 ) . Mapping the Arabidopsis organelle proteome . Proc Natl Acad Sci U S A vol. 103 , ( 17 ) 6518 - 6523 .

Saini S, Bessant C, Lee-davey J, Malecha MM ( 2006 ) . VOLTAMMETRIC DETECTION OF METABOLITES IN PHYSIOLOGICAL FLUIDS . Notes: EP Patent 1,636,575 ,

Lilley KS, Hawes C, Hanton SL, Dunkley TPJ, Runions J, Hester S, Weimar T, Shadforth IP et al. ( 2006 ) . Mapping the Arabidopsis organelle proteome . Proceedings of the National Academy of Sciences of the United States of America Article 17 , 6518 - 6523 .

Sadowski PG, Dunkley TPJ, Shadforth IP, Dupree P, Bessant C, Griffin JL, Lilley KS ( 2006 ) . Quantitative proteomic approach to study subcellular localization of membrane proteins . Nat Protoc vol. 1 , ( 4 ) 1778 - 1789 .

Shadforth I, Crowther D, Bessant C ( 2005 ) . Protein and peptide identification algorithms using MS for use in high-throughput, automated pipelines . Proteomics vol. 5 , ( 16 ) 4082 - 4095 .

Shadforth IP, Dunkley TPJ, Lilley KS, Bessant C ( 2005 ) . i-Tracker: for quantitative proteomics using iTRAQ . BMC Genomics vol. 6 ,

Shadforth I, Todd K, Crowther D, Bessant C ( 2005 ) . Determination of partial amino acid composition from tandem mass spectra for use in peptide identification strategies . Proteomics vol. 5 , ( 7 ) 1787 - 1796 .

SAINI S, BESSANT C, LEE-DAVEY J, MALECHA M, others ( 2005 ) . VOLTAMMETRIC DETECTION OF METABOLITES IN PHYSIOLOGICAL FLUIDS . Notes: WO Patent 2,005,001,463 ,

Shadforth I, Dunkley T, Lilley K, Crowther D, Bessant C ( 2005 ) . Confident protein identification using the average peptide score method coupled with search-specific, ab initio thresholds . Rapid Commun Mass Spectrom vol. 19 , ( 22 ) 3363 - 3368 .

Mead JA, Bianco L, Bessant C ( 2005 ) . the focus of attention in financial reporting . Abacus

Fend R, Bessant C, Williams AJ, Woodman AC ( 2004 ) . Monitoring haemodialysis using electronic nose and chemometrics . Biosens Bioelectron vol. 19 , ( 12 ) 1581 - 1590 .

Saini S, Bessant C, Lee-Davey J, Malecha MM ( 2004 ) . Voltammetric detection of metabolites in physiological fluids . Google Patents Notes: US Patent App. 10/562,229 ,

Richards E, Bessant C, Saini S ( 2004 ) . Simultaneous quantification of analytes in quaternary mixtures using dual pulse staircase voltammetry and genetically optimised neural networks . Analyst vol. 129 , ( 4 ) 355 - 358 .

Saini S, Bessant C, Liedtke C, Leiferkus J ( 2004 ) . DIAGNOSIS BY SENSING VOLATILE COMPONENTS . Notes: EP Patent 1,379,681 ,

Oduguwa A, Tiwari A, Roy R, Bessant C ( 2004 ) . An Overview of Soft Computing Techniques Used in the Drug Discovery Process . WSC . Editors: Abraham, A, Baets, BD, Köppen, M, Nickolay, B et al. , vol. 34 , 465 - 480 .

Shadforth I, Crowther D, Bessant C ( 2004 ) . Search-Space Reduction of a Non-Redundant Peptide Database . CSB . 470 - 471 .

Malecha M, Bessant C, Saini S ( 2003 ) . Identification of oil contaminants on polymer coated beverage cans using fluorescence spectroscopy . Appl Spectrosc vol. 57 , ( 8 ) 1042 - 1048 .

Richards E, Bessant C, Saini S ( 2003 ) . A liquid handling system for the automated acquisition of data for training, validating and testing calibration models . Sensors and Actuators B: Chemical vol. 88 , Article 2 , 149 - 154 .

Bessant C, Richards E ( 2003 ) . Neural networks for the calibration of voltammetric data . Nature-inspired methods in chemometrics: genetic algorithms and artificial neural networks: genetic algorithms and artificial neural networks vol. 23 , 257 - 257 .

SAINI S, BESSANT C, LIEDTKE C, LEIFERKUS J, others ( 2002 ) . DIAGNOSIS BY SENSING VOLATILE COMPONENTS . Notes: WO Patent 2,002,086,149 ,

Malecha M, Bessant C, Saini S ( 2002 ) . Principal components analysis for the visualisation of multidimensional chemical data acquired by scanning Raman microspectroscopy . Analyst vol. 127 , ( 9 ) 1261 - 1266 .

Saini S, Bessant C, Liedtke C, Leiferkus J ( 2002 ) . Diagnosis by sensing volatile components . Google Patents Notes: US Patent App. 10/475,310 ,

Malecha M, Bessant C, Perry D, Saini S ( 2002 ) . Identification of oil contaminants on polymer coated beverage cans using Raman spectroscopy . Analyst vol. 127 , Article 2 , 297 - 303 .

Richards E, Bessant C, Saini S ( 2002 ) . Multivariate data analysis in electroanalytical chemistry . Electroanalysis vol. 14 , Article 22 , 1533 - 1542 .

Richards E, Bessant C, Saini S ( 2002 ) . Optimisation of a neural network model for calibration of voltammetric data . Chemometrics and intelligent laboratory systems vol. 61 , Article 1 , 35 - 49 .

Brereton RG, Bessant C ( 2001 ) . Simultaneous resolution of overlapping tailing peaks of Isomers using dual detector diode array liquid Chromatography electrospray mass spectrometry . Conference: Aegean Analytical Chemistry Conference

Saini S, Barr H, Bessant C ( 2001 ) . Sniffing out disease using the artificial nose . Biologist (London) vol. 48 , ( 5 ) 229 - 233 .

Bessant C, Ritchie L, Saini S, Pahlavanpour B, Wilson G ( 2001 ) . Chemometric evaluation of synchronous scan fluorescence spectroscopy for the determination of regulatory conformance and usage history of insulation oils . Applied spectroscopy vol. 55 , Article 7 , 840 - 846 .

Ritchie LJ, Ferguson CP, Bessant C, Saini S ( 2000 ) . A ten channel fibre-optic device for distributed sensing of underground hydrocarbon leakage . J Environ Monit vol. 2 , ( 6 ) 670 - 673 .

SAINI S, BESSANT C ( 2000 ) . ANALYSIS OF MIXTURES . Notes: WO Patent 2,000,020,855 ,

Bessant C, Saini S ( 2000 ) . A chemometric analysis of dual pulse staircase voltammograms obtained in mixtures of ethanol, fructose and glucose . Journal of electroanalytical chemistry vol. 489 , Article 1 , 76 - 83 .

Brereton R, others ( 1999 ) . Integrated processing of triply coupled diode array liquid chromatography electrospray mass spectrometric signals by chemometric methods . Analyst vol. 124 , Article 12 , 1733 - 1744 .

Bessant C, Saini S ( 1999 ) . Simultaneous determination of ethanol, fructose, and glucose at an unmodified platinum electrode using artificial neural networks . Analytical Chemistry vol. 71 , Article 14 , 2806 - 2813 .

Bessant C, Saini S ( 1997 ) . An object oriented approach to electroanalytical technique implementation . Electroanalysis vol. 9 , Article 12 , 926 - 931 .