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Publications:  Dr Laurent Frantz

Levy H, Fiddaman SR, Vianna JA, Noll D, Clucas GV, Sidhu JKH, Polito MJ, Bost CA et al.(2020). Evidence of pathogen-induced immunogenetic selection across the large geographic range of a wild seabird. Molecular Biology and Evolution
Frantz LAF, Bradley DG, Larson G, Orlando L(2020). Animal domestication in the era of ancient genomics. Nature Reviews Genetics
Liu L, Bosse M, Megens HJ, Frantz LAF, Lee YL, Irving-Pease EK, Narayan G, Groenen MAM et al.(2019). Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion. Nature Communications vol. 10, (1)
Frantz LAF, Haile J, Lin AT, Scheu A, Geörg C, Benecke N, Alexander M, Linderholm A et al.(2019). Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe. Proceedings of the National Academy of Sciences of the United States of America vol. 116, (35) 17231-17238.
Velsko IM, Fellows Yates JA, Aron F, Hagan RW, Frantz LAF, Loe L, Martinez JBR, Chaves E et al.(2019). Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage. Microbiome vol. 7, (1)
Ostrander EA, Wang GD, Larson G, Vonholdt BM, Davis BW, Jagannathan V, Hitte C, Wayne RK et al.(2019). Dog10K: An international sequencing effort to advance studies of canine domestication, phenotypes and health. National Science Review vol. 6, (4) 810-824.
Kuang WM, Ming C, Li HP, Wu H, Frantz L, Roos C, Zhang YP, Zhang CL et al.(2019). The Origin and Population History of the Endangered Golden Snub-Nosed Monkey (Rhinopithecus roxellana). Molecular Biology and Evolution vol. 36, (3) 487-499.
Ollivier M, Tresset A, Frantz LAF, Bréhard S, B¿l¿¿escu A, Mashkour M, Boroneant A, Pionnier-Capitan M et al.(2018). Dogs accompanied humans during the Neolithic expansion into Europe. Biology Letters vol. 14, (10)
FRANTZ LAF(2018). Paleogenomics of Animal Domestication.
Beeravolu CR, Hickerson MJ, Frantz LAF, Lohse K(2018). ABLE: blockwise site frequency spectra for inferring complex population histories and recombination. Genome Biology vol. 19, (1)
FRANTZ LAF, LARSON G(2018). A genetic perspective on the domestication continuum. Hybrid Communities: Biosocial Approaches to Domestication and Other Trans-species Relationships, Taylor & Francis
FRANTZ LAF(2018). The Evolutionary History of Dogs in the Americas. Science
Velsko IM, Frantz LAF, Herbig A, Larson G, Warinner C(2018). Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research. mSystems vol. 3, (4)
Frantz LAF, Rudzinski A, Nugraha AMS, Evin A, Burton J, Hulme-Beaman A, Linderholm A, Barnett R et al.(2018). Synchronous diversification of sulawesi’s iconic artiodactyls driven by recent geological events. Proceedings of the Royal Society B: Biological Sciences vol. 285, (1876)
Irving-Pease EK, Frantz LAF, Sykes N, Callou C, Larson G(2018). Rabbits and the Specious Origins of Domestication. Trends Ecol Evol vol. 33, (3) 149-152.
Velsko IM, Overmyer KA, Speller C, Klaus L, Collins MJ, Loe L, Frantz LAF, Sankaranarayanan K et al.(2017). The dental calculus metabolome in modern and historic samples. Metabolomics vol. 13, (11) 134-134.
Prendergast ME, Buckley M, Crowther A, Frantz L, Eager H, Lebrasseur O, Hutterer R, Hulme-Beaman A et al.(2017). Reconstructing Asian faunal introductions to eastern Africa from multi-proxy biomolecular and archaeological datasets. PLOS ONE vol. 12, (8) e0182565-e0182565.
Adeola AC, Oluwole OO, Oladele BM, Olorungbounmi TO, Boladuro B, Olaogun SC, Nneji LM, Sanke OJ et al.(2017). Analysis of the genetic variation in mitochondrial DNA, Y-chromosome sequences, and MC1R sheds light on the ancestry of Nigerian indigenous pigs. Genet Sel Evol vol. 49, (1) 52-52.
Bosse M, Lopes MS, Madsen O, Megens HJ, Crooijmans RPMA, Frantz LAF, Harlizius B, Bastiaansen JWM et al.(2016). Artificial selection on introduced Asian haplotypes shaped the genetic architecture in european commercial pigs. Proceedings of the Royal Society B: Biological Sciences vol. 282, (1821)
Linderholm A, Spencer D, Battista V, Frantz L, Barnett R, Fleischer RC, James HF, Duffy D et al.(2016). A novel MC1R allele for black coat colour reveals the Polynesian ancestry and hybridization patterns of Hawaiian feral pigs. Royal Society Open Science vol. 3, (9) 160304-160304.
Frantz LAF, Mullin VE, Pionnier-Capitan M, Lebrasseur O, Ollivier M, Perri A, Linderholm A, Mattiangeli V et al.(2016). Genomic and archaeological evidence suggest a dual origin of domestic dogs. Science vol. 352, (6290) 1228-1231.
Frantz L, Meijaard E, Gongora J, Haile J, Groenen MAM, Larson G(2016). The Evolution of Suidae. Annual Review of Animal Biosciences vol. 4, (1) 61-85.
Paudel Y, Madsen O, Megens HJ, Frantz LAF, Bosse M, Crooijmans RPMA, Groenen MAM(2015). Copy number variation in the speciation of pigs: A possible prominent role for olfactory receptors. BMC Genomics vol. 16, (1)
Bunnefeld L, Frantz LAF, Lohse K(2015). Inferring bottlenecks from genome-wide samples of short sequence blocks. Genetics vol. 201, (3) 1157-1169.
Frantz LAF, Schraiber JG, Madsen O, Megens HJ, Cagan A, Bosse M, Paudel Y, Crooijmans RPMA et al.(2015). Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes. Nature Genetics vol. 47, (10) 1141-1148.
Frantz LAF, Madsen O, Megens HJ, Schraiber JG, Paudel Y, Bosse M, Crooijmans RPMA, Larson G et al.(2015). Evolution of Tibetan wild boars. Nature Genetics vol. 47, (3) 188-189.
Bosse M, Megens HJ, Frantz LAF, Madsen O, Larson G, Paudel Y, Duijvesteijn N, Harlizius B et al.(2014). Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression. Nature Communications vol. 5,
Rowntree JK, Zytynska SE, Frantz L, Hurst B, Johnson A, Preziosi RF(2014). The genetics of indirect ecological effects—plant parasites and aphid herbivores. Frontiers in Genetics vol. 5,
Bosse M, Madsen O, Megens HJ, Frantz LAF, Paudel Y, Crooijmans RPMA, Groenen MAM(2014). Hybrid origin of European commercial pigs examined by an in-depth haplotype analysis on chromosome 1. Frontiers in Genetics vol. 5, (DEC)
Lohse K, Frantz LAF(2014). Neandertal admixture in eurasia confirmed by maximum-likelihood analysis of three genomes. Genetics vol. 196, (4) 1241-1251.
Frantz LAF, Madsen O, Megens HJ, Groenen MAM, Lohse K(2014). Testing models of speciation from genome sequences: Divergence and asymmetric admixture in Island South-East Asian Sus species during the Plio-Pleistocene climatic fluctuations. Molecular Ecology vol. 23, (22) 5566-5574.
Bosse M, Megens HJ, Madsen O, Frantz LAF, Paudel Y, Crooijmans RPMA, Groenen MAM(2014). Untangling the hybrid nature of modern pig genomes: A mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations. Molecular Ecology vol. 23, (16) 4089-4102.
Zytynska SE, Frantz L, Hurst B, Johnson A, Preziosi RF, Rowntree JK(2013). Host-plant genotypic diversity and community genetic interactions mediate aphid spatial distribution. Ecology and Evolution vol. 4, (2) 121-131.
Frantz LAF, Schraiber JG, Madsen O, Megens HJ, Bosse M, Paudel Y, Semiadi G, Meijaard E et al.(2013). Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus. Genome Biology vol. 14, (9)
Paudel Y, Madsen O, Megens HJ, Frantz LAF, Bosse M, Bastiaansen JWM, Crooijmans RPMA, Groenen MAM(2013). Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication. BMC Genomics vol. 14, (1)
Groenen MAM, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C et al.(2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature vol. 491, (7424) 393-398.
Bosse M, Megens HJ, Madsen O, Paudel Y, Frantz LAF, Schook LB, Crooijmans RPMA, Groenen MAM(2012). Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape. PLoS Genetics vol. 8, (11)
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