Publications: Dr Lovorka Stojic

Dodel M, Guiducci G, Dermit M, Krishnamurthy S, Alard EL, Capraro F, Rekad Z, Stojic L et al. ( 2024 ) . TREX reveals proteins that bind to specific RNA regions in living cells . Nature Methods vol. 21 , ( 3 ) 423 - 434 .

Søndergaard JN, Sommerauer C, Atanasoai I, Hinte LC, Geng K, Guiducci G, Bräutigam L, Aouadi M et al. ( 2022 ) . CCT3-LINC00326 axis regulates hepatocarcinogenic lipid metabolism . Gut vol. 71 , ( 10 ) 2081 - 2092 .

Guiducci G, Stojic L ( 2021 ) . Long Noncoding RNAs at the Crossroads of Cell Cycle and Genome Integrity . Trends in Genetics

Stojic L ( 2020 ) . Tuning the Expression of Long Noncoding RNA Loci with CRISPR Interference . Methods in Molecular Biology vol. 2161 , 1 - 16 .

( 2019 ) . Erratum for the Report: “Aging increases cell-to-cell transcriptional variability upon immune stimulation” by C. P. Martinez-Jimenez, N. Eling, H.-C. Chen, C. A. Vallejos, A. A. Kolodziejczyk, F. Connor, L. Stojic, T. F. Rayner, M. J. T. Stubbington, S. A. Teichmann, M. de la Roche, J. C. Marioni, D. T. Odom . Science vol. 366 , ( 6472 )

Stojic L, Lun ATL, Mascalchi P, Ernst C, Redmond AM, Mangei J, Barr AR, Bousgouni V et al. ( 2019 ) . A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division .

( 2019 ) . Spotlight On Early Career Researchers: an interview with Lovorka Stojic . Communications Biology vol. 2 , ( 1 )

Stojic L, Lun ATL, Mangei J, Mascalchi P, Quarantotti V, Barr AR, Bakal C, Marioni JC et al. ( 2018 ) . Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis . Nucleic Acids Research vol. 46 , ( 12 ) 5950 - 5966 .

Tichon A, Perry RB-T, Stojic L, Ulitsky I ( 2018 ) . SAM68 is required for regulation of Pumilio by the NORAD long noncoding RNA . Genes & Development vol. 32 , ( 1 ) 70 - 78 .

Stojic L, Lun A, Mangei J, Mascalchi P, Quarantotti V, Barr AR, Bakal C, Marioni JC et al. ( 2017 ) . Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis .

Chavali PL, Stojic L, Meredith LW, Joseph N, Nahorski MS, Sanford TJ, Sweeney TR, Krishna BA et al. ( 2017 ) . Neurodevelopmental protein Musashi-1 interacts with the Zika genome and promotes viral replication . Science vol. 357 , ( 6346 ) 83 - 88 .

Martinez-Jimenez CP, Eling N, Chen H-C, Vallejos CA, Kolodziejczyk AA, Connor F, Stojic L, Rayner TF et al. ( 2017 ) . Aging increases cell-to-cell transcriptional variability upon immune stimulation . Science vol. 355 , ( 6332 ) 1433 - 1436 .

Ernst C, Pike J, Aitken SJ, Long HK, Eling N, Stojic L, Ward MC, Connor F et al. ( 2016 ) . Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis . eLife vol. 5 ,

Stojic L, Niemczyk M, Orjalo A, Ito Y, Ruijter AEM, Uribe-Lewis S, Joseph N, Weston S et al. ( 2016 ) . Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions . Nature Communications vol. 7 , ( 1 )

Murrell A, Stojic L, Niemczyk M ( 2016 ) . What lies beneath the epigenetic signatures associated with breast cancer and how do we find out? . BREAST CANCER RESEARCH AND TREATMENT . vol. 159 , 190 - 190 .

Uribe-Lewis S, Stark R, Carroll T, Dunning MJ, Bachman M, Ito Y, Stojic L, Halim S et al. ( 2015 ) . 5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer . Genome Biology vol. 16 , ( 1 )

Pani E, Stojic L, El-Shemerly M, Jiricny J, Ferrari S ( 2014 ) . Mismatch Repair Status and the Response of Human Cells to Cisplatin . Cell Cycle vol. 6 , ( 14 ) 1796 - 1802 .

Niemczyk M, Ito Y, Huddleston J, Git A, Abu-Amero S, Caldas C, Moore GE, Stojic L et al. ( 2013 ) . Imprinted Chromatin around DIRAS3 Regulates Alternative Splicing of GNG12-AS1, a Long Noncoding RNA . American Journal of Human Genetics vol. 93 , ( 2 ) 224 - 235 .

Niemczyk M, Stojic L, Murrell A ( 2012 ) . <i>DIRAS3</i> imprinting regulates expression and alternative splicing of a long non-coding RNA, <i>GNG12</i>-<i>AS1</i> gene . GENETICS RESEARCH . vol. 94 , 359 - 359 .

Stojic L, Jasencakova Z, Prezioso C, Stützer A, Bodega B, Pasini D, Klingberg R, Mozzetta C et al. ( 2011 ) . Chromatin regulated interchange between polycomb repressive complex 2 (PRC2)-Ezh2 and PRC2-Ezh1 complexes controls myogenin activation in skeletal muscle cells . Epigenetics & Chromatin vol. 4 , ( 1 )

Borbone E, Troncone G, Ferraro A, Jasencakova Z, Stojic L, Esposito F, Hornig N, Fusco A et al. ( 2011 ) . Enhancer of Zeste Homolog 2 Overexpression Has a Role in the Development of Anaplastic Thyroid Carcinomas . The Journal of Clinical Endocrinology & Metabolism vol. 96 , ( 4 ) 1029 - 1038 .

Uribe-Lewis S, Woodfine K, Stojic L, Murrell A ( 2011 ) . Molecular mechanisms of genomic imprinting and clinical implications for cancer . Expert Reviews in Molecular Medicine vol. 13 ,

Stojic L, Cejka P, Jiricny J ( 2005 ) . High Doses of SN1 Type Methylating Agents Activate DNA Damage Signaling Cascades that are Largely Independent of Mismatch Repair . Cell Cycle vol. 4 , ( 3 ) 473 - 477 .

Stojic L, Brun R, Jiricny J ( 2004 ) . Mismatch repair and DNA damage signalling . DNA Repair vol. 3 , ( 8-9 ) 1091 - 1101 .

Stojic L, Mojas N, Cejka P, di Pietro M, Ferrari S, Marra G, Jiricny J ( 2004 ) . Mismatch repair-dependent G2 checkpoint induced by low doses of SN1 type methylating agents requires the ATR kinase . Genes & Development vol. 18 , ( 11 ) 1331 - 1344 .

Cejka P, Stojic L, Marra G, Jiricny J ( 2004 ) . Is mismatch repair really required for ionizing radiation–induced DNA damage signaling? . Nature Genetics vol. 36 , ( 5 ) 432 - 433 .

di Pietro M, Marra G, Cejka P, Stojic L, Menigatti M, Cattaruzza MS, Jiricny J ( 2003 ) . Mismatch repair-dependent transcriptome changes in human cells treated with the methylating agent N-methyl-n'-nitro-N-nitrosoguanidine . Cancer Research vol. 63 , ( 23 ) 8158 - 8166 .

Cejka P, Stojic L, Mojas N, Russell AM, Heinimann K, Cannavó E, di Pietro M, Marra G et al. ( 2003 ) . Methylation‐induced G2/M arrest requires a full complement of the mismatch repair protein hMLH1 . The EMBO Journal vol. 22 , ( 9 ) 2245 - 2254 .