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Publications:  Dr Alexandre de Mendoza Soler

de Mendoza A, Lister R, Bogdanovic O(2019). Evolution of DNA Methylome Diversity in Eukaryotes. Journal of Molecular Biology vol. 432, (6) 1687-1705.
10.1016/j.jmb.2019.11.003
https://qmro.qmul.ac.uk/xmlui/handle/123456789/64527
de Mendoza A, Sebé-Pedrós A(2019). Origin and evolution of eukaryotic transcription factors. Current Opinion in Genetics and Development vol. 58-59, 25-32.
10.1016/j.gde.2019.07.010
de Mendoza A, Hatleberg WL, Pang K, Leininger S, Bogdanovic O, Pflueger J, Buckberry S, Technau U et al.(2019). Convergent evolution of a vertebrate-like methylome in a marine sponge. Nature Ecology and Evolution vol. 3, (10) 1464-1473.
10.1038/s41559-019-0983-2
https://qmro.qmul.ac.uk/xmlui/handle/123456789/64475
De Mendoza A, Pflueger J, Lister R(2019). Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family. Genome Research vol. 29, (8) 1277-1286.
10.1101/gr.243774.118
https://qmro.qmul.ac.uk/xmlui/handle/123456789/64476
De Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Hong F, Yang F, Li L, Hori K et al.(2018). Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nature Communications vol. 9, (1)
10.1038/s41467-018-03724-9
https://qmro.qmul.ac.uk/xmlui/handle/123456789/64526
Knaupp AS, Buckberry S, Pflueger J, Lim SM, Ford E, Larcombe MR, Rossello FJ, de Mendoza A et al.(2017). Transient and Permanent Reconfiguration of Chromatin and Transcription Factor Occupancy Drive Reprogramming. Cell Stem Cell vol. 21, (6) 834-845.e6.
10.1016/j.stem.2017.11.007
https://qmro.qmul.ac.uk/xmlui/handle/123456789/64648
Gold DA, Grabenstatter J, De Mendoza A, Riesgo A, Ruiz-Trillo I, Summons RE(2016). Sterol and genomic analyses validate the sponge biomarker hypothesis. Proceedings of the National Academy of Sciences of the United States of America vol. 113, (10) 2684-2689.
10.1073/pnas.1512614113
De Mendoza A, Jones JW, Friedrich M(2016). Methuselah/Methuselah-like G protein-coupled receptors constitute an ancient metazoan gene family. Scientific Reports vol. 6,
10.1038/srep21801
de Mendoza A, Suga H, Permanyer J, Irimia M, Ruiz-Trillo I(2015). Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals. eLife vol. 4, (OCTOBER2015)
10.7554/eLife.08904.001
Torruella G, De Mendoza A, Grau-Bové X, Antó M, Chaplin MA, Del Campo J, Eme L, Pérez-Cordón G et al.(2015). Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi. Current Biology vol. 25, (18) 2404-2410.
10.1016/j.cub.2015.07.053
De Mendoza A, Ruiz-Trillo I(2014). Forward genetics for back-in-time questions. eLife vol. 3, (November) 1-3.
10.7554/eLife.05218
Desvoyes B, De Mendoza A, Ruiz-Trillo I, Gutierrez C(2014). Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division. Journal of Experimental Botany vol. 65, (10) 2657-2666.
10.1093/jxb/ert411
De Mendoza A, Sebé-Pedrós A, Ruiz-Trillo I(2014). The evolution of the GPCR signaling system in eukaryotes: Modularity, conservation, and the transition to metazoan multicellularity. Genome Biology and Evolution vol. 6, (3) 606-619.
10.1093/gbe/evu038
De Mendoza A, Sebé-Pedrós A, Šestak MS, Matej¿i¿ M, Torruella G, Domazet-Lošo T, Ruiz-Trillo I(2013). Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages. Proceedings of the National Academy of Sciences of the United States of America vol. 110, (50)
10.1073/pnas.1311818110
Martín-Durán JM, De Mendoza A, Sebé-Pedrós A, Ruiz-Trillo I, Hejnol A(2013). A broad genomic survey reveals multiple origins and frequent losses in the evolution of respiratory hemerythrins and hemocyanins. Genome Biology and Evolution vol. 5, (7) 1435-1442.
10.1093/gbe/evt102
https://qmro.qmul.ac.uk/xmlui/handle/123456789/34472
Suga H, Chen Z, De Mendoza A, Sebé-Pedrós A, Brown MW, Kramer E, Carr M, Kerner P et al.(2013). The Capsaspora genome reveals a complex unicellular prehistory of animals. Nature Communications vol. 4,
10.1038/ncomms3325
Suga H, Dacre M, De Mendoza A, Shalchian-Tabrizi K, Manning G, Ruiz-Trillo I(2012). Genomic survey of premetazoans shows deep conservation of cytoplasmic tyrosine kinases and multiple radiations of receptor tyrosine kinases. Science Signaling vol. 5, (222)
10.1126/scisignal.2002733
de Mendoza A, Ruiz-Trillo I(2011). New genomes, new taxa and deep questions in the eukaryotic tree of life: A meeting report on the EMBO comparative genomics conference. EvoDevo vol. 2, (1)
10.1186/2041-9139-2-22
De Mendoza A, Ruiz-Trillo I(2011). The mysterious evolutionary origin for the GNE gene and the root of bilateria. Molecular Biology and Evolution vol. 28, (11) 2987-2991.
10.1093/molbev/msr142
Sebé-Pedrós A, De Mendoza A, Lang BF, Degnan BM, Ruiz-Trillo I(2011). Unexpected repertoire of metazoan transcription factors in the unicellular holozoan capsaspora owczarzaki. Molecular Biology and Evolution vol. 28, (3) 1241-1254.
10.1093/molbev/msq309
De Mendoza A, Suga H, Ruiz-Trillo I(2010). Evolution of the MAGUK protein gene family in premetazoan lineages. BMC Evolutionary Biology vol. 10, (1)
10.1186/1471-2148-10-93
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