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Publications:  Dr Mirjana Efremova

Penkava F, Velasco-Herrera MDC, Young MD, Yager N, Nwosu LN, Pratt AG, Lara AL, Guzzo C et al.(2020). Single-cell sequencing reveals clonal expansions of pro-inflammatory synovial CD8 T cells expressing tissue-homing receptors in psoriatic arthritis. Nature Communications vol. 11, (1)
Prokopi N, Tripp C, Tummers B, Crawford J, Efremova M, Hutter K, Bellmann L, Cappellano G et al.(2020). P03.31 Skin dendritic cells in melanoma are key for successful checkpoint blockade therapy. Journal for ImmunoTherapy of Cancer vol. 8, (Suppl 2) a35.2-a3a36.
Raddi G, Barletta ABF, Efremova M, Ramirez JL, Cantera R, Teichmann SA, Barillas-Mury C, Billker O(2020). Mosquito cellular immunity at single-cell resolution. Science vol. 369, (6507) 1128-1132.
Davidson S, Efremova M, Riedel A, Mahata B, Pramanik J, Huuhtanen J, Kar G, Vento-Tormo R et al.(2020). Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth. Cell Reports vol. 31, (7)
Efremova M, Vento-Tormo R, Park JE, Teichmann SA, James KR(2020). Immunology in the Era of Single-Cell Technologies. Annual Review of Immunology vol. 38, 727-757.
Efremova M, Vento-Tormo M, Teichmann SA, Vento-Tormo R(2020). CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes. Nature Protocols vol. 15, (4) 1484-1506.
Efremova M, Teichmann SA(2020). Computational methods for single-cell omics across modalities. Nature Methods vol. 17, (1) 14-17.
Ramachandran P, Dobie R, Wilson-Kanamori JR, Dora EF, Henderson BEP, Luu NT, Portman JR, Matchett KP et al.(2019). Resolving the fibrotic niche of human liver cirrhosis at single-cell level. Nature vol. 575, (7783) 512-518.
Popescu DM, Botting RA, Stephenson E, Green K, Webb S, Jardine L, Calderbank EF, Polanski K et al.(2019). Decoding human fetal liver haematopoiesis. Nature vol. 574, (7778) 365-371.
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL et al.(2019). Spatiotemporal immune zonation of the human kidney. Science vol. 365, (6460) 1461-1466.
Vieira Braga FA, Kar G, Berg M, Carpaij OA, Polanski K, Simon LM, Brouwer S, Gomes T et al.(2019). A cellular census of human lungs identifies novel cell states in health and in asthma. Nature Medicine vol. 25, (7) 1153-1163.
Prokopi N, Tripp CH, Tummers B, Komenda K, Hutter K, Cappellano G, Bellmann L, Efremova M et al. (2019). Restoration of anti-tumor T cell responses by restoration of skin dendritic cell numbers in a spontaneous melanoma mouse model. EXPERIMENTAL DERMATOLOGY. vol. 28, E76-E76.
Prokopi A, Tripp CH, Tummers B, Komenda K, Hutter K, Cappellano G, Bellmann L, Efremova M et al. (2019). Abstract A102: Rescue of lost skin dendritic cells in melanoma is key for the resuscitation of antitumor T-cell responses. a102-a102.
Klepsch V, Hermann-Kleiter N, Do-Dinh P, Jakic B, Offermann A, Efremova M, Sopper S, Rieder D et al.(2018). Nuclear receptor NR2F6 inhibition potentiates responses to PD-L1/PD-1 cancer immune checkpoint blockade. Nature Communications vol. 9, (1)
Efremova M, Rieder D, Klepsch V, Charoentong P, Finotello F, Hackl H, Hermann-Kleiter N, Löwer M et al.(2018). Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution. Nature Communications vol. 9, (1)
Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E et al.(2018). Single-cell reconstruction of the early maternal–fetal interface in humans. Nature vol. 563, (7731) 347-353.
Efremova M, Finotello F, Rieder D, Trajanoski Z(2017). Neoantigens generated by individual mutations and their role in cancer immunity and immunotherapy. Frontiers in Immunology vol. 8,
Charoentong P, Finotello F, Angelova M, Mayer C, Efremova M, Rieder D, Hackl H, Trajanoski Z(2017). Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade. Cell Reports vol. 18, (1) 248-262.
Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher MR et al.(2014). A survey of tools for variant analysis of next-generation genome sequencing data. Briefings in Bioinformatics vol. 15, (2) 256-278.
Gallasch R, Efremova M, Charoentong P, Hackl H, Trajanoski Z(2013). Mathematical models for translational and clinical oncology. Journal of Clinical Bioinformatics vol. 3, (1)
Charoentong P, Angelova M, Efremova M, Gallasch R, Hackl H, Galon J, Trajanoski Z(2012). Bioinformatics for cancer immunology and immunotherapy. Cancer Immunology, Immunotherapy vol. 61, (11) 1885-1903.
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