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Publications:  Dr Mirjana Efremova

Penkava F, Velasco-Herrera MDC, Young MD, Yager N, Nwosu LN, Pratt AG, Lara AL, Guzzo C et al.(2020). Single-cell sequencing reveals clonal expansions of pro-inflammatory synovial CD8 T cells expressing tissue-homing receptors in psoriatic arthritis. Nature Communications vol. 11, (1)
10.1038/s41467-020-18513-6
https://qmro.qmul.ac.uk/xmlui/handle/123456789/67651
Prokopi N, Tripp C, Tummers B, Crawford J, Efremova M, Hutter K, Bellmann L, Cappellano G et al.(2020). P03.31 Skin dendritic cells in melanoma are key for successful checkpoint blockade therapy. Journal for ImmunoTherapy of Cancer vol. 8, (Suppl 2) a35.2-a3a36.
10.1136/jitc-2020-itoc7.69
https://qmro.qmul.ac.uk/xmlui/handle/123456789/67878
Raddi G, Barletta ABF, Efremova M, Ramirez JL, Cantera R, Teichmann SA, Barillas-Mury C, Billker O(2020). Mosquito cellular immunity at single-cell resolution. Science vol. 369, (6507) 1128-1132.
10.1126/science.abc0322
https://qmro.qmul.ac.uk/xmlui/handle/123456789/67158
Davidson S, Efremova M, Riedel A, Mahata B, Pramanik J, Huuhtanen J, Kar G, Vento-Tormo R et al.(2020). Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth. Cell Reports vol. 31, (7)
10.1016/j.celrep.2020.107628
https://qmro.qmul.ac.uk/xmlui/handle/123456789/68237
Efremova M, Vento-Tormo R, Park JE, Teichmann SA, James KR(2020). Immunology in the Era of Single-Cell Technologies. Annual Review of Immunology vol. 38, 727-757.
10.1146/annurev-immunol-090419-020340
https://qmro.qmul.ac.uk/xmlui/handle/123456789/68238
Efremova M, Vento-Tormo M, Teichmann SA, Vento-Tormo R(2020). CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes. Nature Protocols vol. 15, (4) 1484-1506.
10.1038/s41596-020-0292-x
https://qmro.qmul.ac.uk/xmlui/handle/123456789/68235
Efremova M, Teichmann SA(2020). Computational methods for single-cell omics across modalities. Nature Methods vol. 17, (1) 14-17.
10.1038/s41592-019-0692-4
https://qmro.qmul.ac.uk/xmlui/handle/123456789/68236
Ramachandran P, Dobie R, Wilson-Kanamori JR, Dora EF, Henderson BEP, Luu NT, Portman JR, Matchett KP et al.(2019). Resolving the fibrotic niche of human liver cirrhosis at single-cell level. Nature vol. 575, (7783) 512-518.
10.1038/s41586-019-1631-3
Popescu DM, Botting RA, Stephenson E, Green K, Webb S, Jardine L, Calderbank EF, Polanski K et al.(2019). Decoding human fetal liver haematopoiesis. Nature vol. 574, (7778) 365-371.
10.1038/s41586-019-1652-y
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL et al.(2019). Spatiotemporal immune zonation of the human kidney. Science vol. 365, (6460) 1461-1466.
10.1126/science.aat5031
Vieira Braga FA, Kar G, Berg M, Carpaij OA, Polanski K, Simon LM, Brouwer S, Gomes T et al.(2019). A cellular census of human lungs identifies novel cell states in health and in asthma. Nature Medicine vol. 25, (7) 1153-1163.
10.1038/s41591-019-0468-5
Prokopi N, Tripp CH, Tummers B, Komenda K, Hutter K, Cappellano G, Bellmann L, Efremova M et al. (2019). Restoration of anti-tumor T cell responses by restoration of skin dendritic cell numbers in a spontaneous melanoma mouse model. EXPERIMENTAL DERMATOLOGY. vol. 28, E76-E76.
Prokopi A, Tripp CH, Tummers B, Komenda K, Hutter K, Cappellano G, Bellmann L, Efremova M et al. (2019). Abstract A102: Rescue of lost skin dendritic cells in melanoma is key for the resuscitation of antitumor T-cell responses. a102-a102.
10.1158/2326-6074.cricimteatiaacr18-a102
Klepsch V, Hermann-Kleiter N, Do-Dinh P, Jakic B, Offermann A, Efremova M, Sopper S, Rieder D et al.(2018). Nuclear receptor NR2F6 inhibition potentiates responses to PD-L1/PD-1 cancer immune checkpoint blockade. Nature Communications vol. 9, (1)
10.1038/s41467-018-04004-2
https://qmro.qmul.ac.uk/xmlui/handle/123456789/67401
Efremova M, Rieder D, Klepsch V, Charoentong P, Finotello F, Hackl H, Hermann-Kleiter N, Löwer M et al.(2018). Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution. Nature Communications vol. 9, (1)
10.1038/s41467-017-02424-0
Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E et al.(2018). Single-cell reconstruction of the early maternal–fetal interface in humans. Nature vol. 563, (7731) 347-353.
10.1038/s41586-018-0698-6
https://qmro.qmul.ac.uk/xmlui/handle/123456789/67403
Efremova M, Finotello F, Rieder D, Trajanoski Z(2017). Neoantigens generated by individual mutations and their role in cancer immunity and immunotherapy. Frontiers in Immunology vol. 8,
10.3389/fimmu.2017.01679
Charoentong P, Finotello F, Angelova M, Mayer C, Efremova M, Rieder D, Hackl H, Trajanoski Z(2017). Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade. Cell Reports vol. 18, (1) 248-262.
10.1016/j.celrep.2016.12.019
Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher MR et al.(2014). A survey of tools for variant analysis of next-generation genome sequencing data. Briefings in Bioinformatics vol. 15, (2) 256-278.
10.1093/bib/bbs086
Gallasch R, Efremova M, Charoentong P, Hackl H, Trajanoski Z(2013). Mathematical models for translational and clinical oncology. Journal of Clinical Bioinformatics vol. 3, (1)
10.1186/2043-9113-3-23
Charoentong P, Angelova M, Efremova M, Gallasch R, Hackl H, Galon J, Trajanoski Z(2012). Bioinformatics for cancer immunology and immunotherapy. Cancer Immunology, Immunotherapy vol. 61, (11) 1885-1903.
10.1007/s00262-012-1354-x
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