Publications: Prof Richard Nichols
da Silva SSM, Faizullah L, Guignard MS, Orcen N, Ruban AV, Rudall PJ, Trimmer M, Nichols RA et al.
(
2024
)
.
Nitrogen and phosphorus interactions at a 21 nitrogen:1 phosphorus Redfield‐like ratio impact growth and seed yield in wheat (Triticum aestivum L.)
.
Food and Energy Security
vol.
13
,
(
4
)
White OW, Biswas MK, Abebe WM, Dussert Y, Kebede F, Nichols RA, Buggs RJA, Demissew S et al.
(
2023
)
.
Maintenance and expansion of genetic and trait variation following domestication in a clonal crop
.
Molecular Ecology
vol.
32
,
(
15
)
4165
-
4180
.
Becher H, Nichols RA
(
2023
)
.
Assembly‐free quantification of vagrant DNA inserts
.
Molecular Ecology Resources
vol.
23
,
(
5
)
1002
-
1013
.
Ford CE, Brookes LM, Skelly E, Sergeant C, Jordine T, Balloux F, Nichols RA, Garner TWJ
(
2022
)
.
Non-Lethal Detection of Frog Virus 3-Like (RUK13) and Common Midwife Toad Virus-Like (PDE18) Ranaviruses in Two UK-Native Amphibian Species
.
Viruses
vol.
14
,
(
12
)
Marquardt J, Blanckaert A, Nichols RA, Ansell SW, Ruhsam M, Hollingsworth PM, Metzler D, Schneider H et al.
(
2022
)
.
Cyto-nuclear incompatibilities across a bluebell hybrid zone in northern Spain do not prevent genome-wide introgression of neutral markers
.
Evolutionary Journal of the Linnean Society
vol.
1
,
(
1
)
kzac003
-
kzac003
.
Lau Y, Oamen HP, Grogg M, Parfenova I, Saarikangas J, Hannay R, Nichols RA, Hilvert D et al.
(
2022
)
.
Whi3 mnemon association with endoplasmic reticulum membranes confines the memory of deceptive courtship to the yeast mother cell
.
Current Biology
vol.
32
,
(
5
)
963
-
974.e7
.
Gathercole LAP, Nocchi G, Brown N, Coker TLR, Plumb WJ, Stocks JJ, Nichols RA, Denman S et al.
(
2021
)
.
Evidence for the Widespread Occurrence of Bacteria Implicated in Acute Oak Decline from Incidental Genetic Sampling
.
Forests
vol.
12
,
(
12
)
1683
-
1683
.
Stevens MCA, Faulkner SC, Wilke ABB, Beier JC, Vasquez C, Petrie W, Fry H, Nichols RA et al.
(
2021
)
.
Spatially clustered count data provide more efficient search strategies in invasion biology and disease control
.
Ecol Apple2329
-
e2329
.
Martinez-Ruiz C, Pracana R, Stolle E, Paris CI, Nichols RA, Wurm Y
(
2020
)
.
Correction: Genomic architecture and evolutionary antagonism drive allelic expression bias in the social supergene of red fire ants
.
eLife
vol.
9
,
Martinez-Ruiz C, Pracana R, Stolle E, Paris CI, Nichols RA, Wurm Y
(
2020
)
.
Genomic architecture and evolutionary antagonism drive allelic expression bias in the social supergene of red fire ants
.
eLife
vol.
9
,
Stocks J, Metheringham C, Plumb W, Lee S, Kelly L, Nichols R, Buggs R
(
2019
)
.
Genomic basis of European ash tree resistance to ash dieback fungus
.
Nature Ecology and Evolution
BORRELL J, ZOHREN J, Nichols R, Buggs R
(
2019
)
.
Genomic assessment of local adaptation in dwarf birch to inform assisted gene flow
.
Evolutionary Applications: evolutionary approaches to environmental, biomedical and socio-economic issues
Duffus ALJ, Garner TWJ, Nichols RA, Standridge JP, Earl JE
(
2019
)
.
Modelling Ranavirus Transmission in Populations of Common Frogs (Rana temporaria) in the United Kingdom
.
Viruses
vol.
11
,
(
6
)
Price SJ, Leung WTM, Owen CJ, Puschendorf R, Sergeant C, Cunningham AA, Balloux F, Garner TWJ et al.
(
2019
)
.
Effects of historic and projected climate change on the range and impacts of an emerging wildlife disease
.
Global Change Biology
vol.
25
,
(
8
)
2648
-
2660
.
Guignard MS, Crawley MJ, Kovalenko D, Nichols RA, Trimmer M, Leitch AR, Leitch IJ
(
2019
)
.
Interactions between plant genome size, nutrients and herbivory by rabbits, molluscs and insects on a temperate grassland
.
Proceedings of the Royal Society B
vol.
286
,
(
1899
)
Jan HU, Guan M, Yao M, Liu W, Wei D, Abbadi A, Zheng M, He X et al.
(
2019
)
.
Genome-wide haplotype analysis improves trait predictions in Brassica napus hybrids
.
Plant Science
vol.
283
,
157
-
164
.
Borrell JS, Wang N, Nichols RA, Buggs RJA
(
2018
)
.
Genetic diversity maintained among fragmented populations of a tree undergoing range contraction
.
Heredity (Edinb)
vol.
121
,
(
4
)
304
-
318
.
Pracana R, Priyam A, Levantis I, Nichols RA, Wurm Y
(
2017
)
.
The fire ant social chromosome supergene variant Sb shows low diversity but high divergence from SB
.
Molecular Ecology
vol.
26
,
(
11
)
2864
-
2879
.
Mijangos JL, Holleley CE, Nichols RA, Towers IN, Jovanoski Z, Sidhu HS, Watt S, Adamack AT et al.
(
2017
)
.
Genetic linkage to explain genetic variation
.
Proceedings - 22nd International Congress on Modelling and Simulation, MODSIM 2017
.
127
-
133
.
Price SJ, Garner TW, Cunningham AA, Langton TE, Nichols RA
(
2016
)
.
Reconstructing the emergence of a lethal infectious disease of wildlife supports a key role for spread through translocations by humans
.
Proc Biol Sci
vol.
283
,
(
1839
)
Verity R, Nichols RA
(
2016
)
.
Estimating the Number of Subpopulations (K) in Structured Populations
.
Genetics: a periodical record of investigations bearing on heredity and variation
vol.
203
,
(
4
)
1827
-
1839
.
Verity R, Nichols RA
(
2016
)
.
Documentation for MAVERICK software: Version 1.0
.
Genetics
vol.
203
,
(
4
)
Verity R, Nichols RA
(
2016
)
.
File s1: Derivation of evidence estimators and model comparison statistics
.
Genetics
vol.
203
,
(
4
)
Zohren J, Wang N, Kardailsky I, Borrell JS, Joecker A, Nichols RA, Buggs RJA
(
2016
)
.
Unidirectional diploid-tetraploid introgression among British birch trees with shifting ranges shown by RAD markers
.
Molecular Ecology
Guignard MS, Nichols RA, Knell RJ, Macdonald A, Romila C-A, Trimmer M, Leitch IJ, LEITCH AR
(
2016
)
.
Genome size and ploidy influence angiosperm species’ biomass under nitrogen and phosphorus limitation
.
New Phytologist
Jan HU, Abbadi A, Lücke S, Nichols RA, Snowdon RJ
(
2016
)
.
Genomic Prediction of Testcross Performance in Canola (Brassica napus)
.
PLOS ONE
vol.
11
,
(
1
)
Kelly LJ, Renny‐Byfield S, Pellicer J, Macas J, Novák P, Neumann P, Lysak MA, Day PD et al.
(
2015
)
.
Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size
.
New Phytologist
vol.
208
,
(
2
)
596
-
607
.
Weinert LA, Depledge DP, Kundu S, Gershon AA, Nichols RA, Balloux F, Welch JJ, Breuer J
(
2015
)
.
Rates of Vaccine Evolution Show Strong Effects of Latency: Implications for Varicella Zoster Virus Epidemiology
.
Molecular Biology and Evolution
vol.
32
,
(
4
)
1020
-
1028
.
Duffus ALJ, Nichols RA, Garner TWJ
(
2014
)
.
Detection of a frog virus 3-like ranavirus in native and introduced amphibians in the United Kingdom in 2007 and 2008
.
Herpetological Review
vol.
45
,
(
4
)
608
-
610
.
Duffus ALJ, Nichols RA, Garner TWJ
(
2014
)
.
Experimental evidence in support of single host maintenance of a multihost pathogen
.
Ecosphere
vol.
5
,
(
11
)
1
-
11
.
Price SJ, Garner TWJ, Nichols RA, Balloux F, Ayres C, de Alba AM-C, Bosch J
(
2014
)
.
Collapse of Amphibian Communities Due to an Introduced Ranavirus
.
Current Biology
vol.
24
,
(
21
)
2586
-
2591
.
Verity R, Nichols RA
(
2014
)
.
What is genetic differentiation, and how should we measure it--GST, D, neither or both?
.
Mol Ecol
vol.
23
,
(
17
)
4216
-
4225
.
Wang N, Borrell JS, Bodles WJA, Kuttapitiya A, Nichols RA, Buggs RJA
(
2014
)
.
Molecular footprints of the Holocene retreat of dwarf birch in Britain
.
Mol Ecol
vol.
23
,
(
11
)
2771
-
2782
.
Chintauan-Marquier IC, Amédégnato C, Nichols RA, Pompanon F, Grandcolas P, Desutter-Grandcolas L
(
2014
)
.
Inside the Melanoplinae: new molecular evidence for the evolutionary history of the Eurasian Podismini (Orthoptera: Acrididae)
.
Mol Phylogenet Evol
vol.
71
,
224
-
233
.
Wang N, Borrell JS, Bodles WJA, Kuttapitiya A, Nichols RA, Buggs RJA
(
2014
)
.
Molecular footprints of the Holocene retreat of dwarf birch in Britain
.
Molecular Ecology
De Silva DR, Nichols R, Elgar G
(
2014
)
.
Purifying selection in deeply conserved human enhancers is more consistent than in coding sequences
.
PLoS One
vol.
9
,
(
7
)
Verity R, Stevenson MD, Rossmo DK, Nichols RA, Le Comber SC
(
2014
)
.
Spatial targeting of infectious disease control: Identifying multiple, unknown sources
.
Methods in Ecology and Evolution
vol.
5
,
(
7
)
647
-
655
.
Holleley CE, Nichols RA, Whitehead MR, Adamack AT, Gunn MR, Sherwin WB
(
2014
)
.
Testing single-sample estimators of effective population size in genetically structured populations
.
CONSERVATION GENETICS
vol.
15
,
(
1
)
23
-
35
.
Hoban S, Arntzen JW, Bertorelle G, Bryja J, Fernandes M, Frith K, Gaggiotti O, Galbusera P et al.
(
2013
)
.
Conservation Genetic Resources for Effective Species Survival (ConGRESS): Bridging the divide between conservation research and practice
.
Journal for Nature Conservation
vol.
21
,
(
6
)
433
-
437
.
Duffus ALJ, Nichols RA, Garner TWJ
(
2013
)
.
Investigations into the life history stages of the common frog (Rana temporaria) affected by an amphibian ranavirus in the United Kingdom
.
Herpetological Review
vol.
44
,
(
2
)
260
-
263
.
Depledge DP, Kundu S, Jensen NJ, Gray ER, Jones M, Steinberg S, Gershon A, Kinchington PR et al.
(
2013
)
.
Deep Sequencing of Viral Genomes Provides Insight into the Evolution and Pathogenesis of Varicella Zoster Virus and Its Vaccine in Humans
.
Molecular Biology and Evolution
vol.
31
,
(
2
)
397
-
409
.
Renny-Byfield S, Kovarik A, Kelly LJ, MacAs J, Novak P, Chase MW, Nichols RA, Pancholi MR et al.
(
2013
)
.
Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences
.
Plant Journal
vol.
74
,
(
5
)
829
-
839
.
Renny-Byfield S, Kovarik A, Kelly LJ, Macas J, Novak P, Chase MW, Nichols RA, Pancholi MR et al.
(
2013
)
.
Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences
.
Plant J
vol.
74
,
(
5
)
829
-
839
.
Nichols RA, Butlin RK, Bruford MW
(
2013
)
.
Godfrey M Hewitt (1940-2013): highlights in Heredity from a career in evolutionary genetics
.
Heredity (Edinb)
vol.
110
,
(
5
)
405
-
406
.
Hoban SM, Hauffe HC, Perez-Espona S, Arntzen JW, Bertorelle G, Bryja J, Frith K, Gaggiotti OE et al.
(
2013
)
.
Bringing genetic diversity to the forefront of conservation policy and management
.
CONSERVATION GENETICS RESOURCES
vol.
5
,
(
2
)
593
-
598
.
Hoban S, Arntzen JW, Bertorelle G, Bryja J, Fernandes M, Frith K, Gaggiotti O, Galbusera P et al.
(
2013
)
.
Conservation Genetic Resources for Effective Species Survival (ConGRESS): Bridging the divide between conservation research and practice
.
Journal for Nature Conservation
Abbott R, Albach D, Ansell S, Arntzen JW, Baird SJE, Bierne N, Boughman JW, Brelsford A et al.
(
2013
)
.
Hybridization and speciation
.
JOURNAL OF EVOLUTIONARY BIOLOGY
vol.
26
,
(
2
)
229
-
246
.
Matyasek R, Renny-Byfield S, Fulnecek J, Macas J, Grandbastien M-A, Nichols R, Leitch A, Kovarik A
(
2013
)
.
Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids
.
BMC GENOMICS
vol.
13
,
(
722
)
Hoban S, Gaggiotti O, Bertorelle G, Arntzen P, Bryja J, Fernandes M, Frith K, Galbusera P et al.
(
2013
)
.
Sample Planning Optimization Tool for conservation and population Genetics (SPOTG): a software for choosing the appropriate number of markers and samples
.
METHODS IN ECOLOGY AND EVOLUTION
vol.
4
,
(
3
)
299
-
303
.
Renny-Byfield S, Kovařík A, Chester M, Nichols RA, Macas J, Novák P, Leitch AR
(
2012
)
.
Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum
.
PLoS One
vol.
7
,
(
5
)
Renny-Byfield S, Chester M, Kovařík A, Le Comber SC, Grandbastien M-A, Deloger M, Nichols RA, Macas J et al.
(
2011
)
.
Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs
.
Mol Biol Evol
vol.
28
,
(
10
)
2843
-
2854
.
Dewar RC, Sherwin WB, Thomas E, Holleley CE, Nichols RA
(
2011
)
.
Predictions of single-nucleotide polymorphism differentiation between two populations in terms of mutual information
.
Mol Ecol
vol.
20
,
(
15
)
3156
-
3166
.
Johnson LJ, Cotton JA, Lichtenstein CP, Elgar GS, Nichols RA, Polly PD, Le Comber SC
(
2011
)
.
Stops making sense: translational trade-offs and stop codon reassignment
.
BMC Evol Biol
vol.
11
,
Kanda RK, Quinlivan ML, Gershon AA, Nichols RA, Breuer J
(
2011
)
.
Population diversity in batches of the varicella Oka vaccine
.
VACCINE
vol.
29
,
(
17
)
3293
-
3298
.
Nichols RA, Averbeck KT, Poulsen AG, al Bassam MM, Cabral F, Aaby P, Breuer J
(
2011
)
.
Household size is critical to varicella-zoster virus transmission in the tropics despite lower viral infectivity
.
Epidemics
vol.
3
,
(
1
)
12
-
18
.
Holleley CE, Nichols RA, Whitehead MR, Gunn MR, Gupta J, Sherwin WB
(
2011
)
.
Induced dispersal in wildlife management: experimental evaluation of the risk of hybrid breakdown and the benefit of hybrid vigor in the F1 generation
.
CONSERV GENET
vol.
12
,
(
1
)
31
-
40
.
Brown RM, Jordan WC, Faulkes CG, Jones CG, Bugoni L, Tatayah V, Palma RL, Nichols RA
(
2011
)
.
Phylogenetic relationships in Pterodroma petrels are obscured by recent secondary contact and hybridization
.
PLoS One
vol.
6
,
(
5
)
Brown RM, Nichols RA, Faulkes CG, Jones CG, Bugoni L, Tatayah V, Gottelli D, Jordan WC
(
2010
)
.
Range expansion and hybridization in Round Island petrels (Pterodroma spp.): evidence from microsatellite genotypes
.
Mol Ecol
vol.
19
,
(
15
)
3157
-
3170
.
Teacher AGF, Garner TWJ, Nichols RA
(
2009
)
.
Population genetic patterns suggest a behavioural change in wild common frogs (Rana temporaria) following disease outbreaks (Ranavirus)
.
MOL ECOL
vol.
18
,
(
15
)
3163
-
3172
.
Veltsos P, Keller I, Nichols RA
(
2009
)
.
Geographically localised bursts of ribosomal DNA mobility in the grasshopper Podisma pedestris
.
Heredity (Edinb)
vol.
103
,
(
1
)
54
-
61
.
Teacher AGF, Garner TWJ, Nichols RA
(
2009
)
.
European phylogeography of the common frog (Rana temporaria): routes of postglacial colonization into the British Isles, and evidence for an Irish glacial refugium
.
Heredity (Edinb)
vol.
102
,
(
5
)
490
-
496
.
Teacher AGF, Garner TWJ, Nichols RA
(
2009
)
.
Evidence for directional selection at a novel major histocompatibility class I marker in wild common frogs (Rana temporaria) exposed to a viral pathogen (Ranavirus)
.
PLoS One
vol.
4
,
(
2
)
Veltsos P, Keller I, Nichols RA
(
2008
)
.
The inexorable spread of a newly arisen neo-Y chromosome
.
PLoS Genet
vol.
4
,
(
5
)
Balding DJ, Nichols RA
(
2008
)
.
A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity (vol 96, pg 3, 1995)
.
GENETICA
vol.
133
,
(
1
)
107
-
107
.
Keller I, Veltsos P, Nichols RA
(
2008
)
.
The frequency of rDNA variants within individuals provides evidence of population history and gene flow across a grasshopper hybrid zone
.
Evolution
vol.
62
,
(
4
)
833
-
844
.
Paulo OS, Pinheiro J, Miraldo A, Bruford MW, Jordan WC, Nichols RA
(
2008
)
.
The role of vicariance vs. dispersal in shaping genetic patterns in ocellated lizard species in the western Mediterranean
.
MOL ECOL
vol.
17
,
(
6
)
1535
-
1551
.
Wilcock HR, Bruford MW, Nichols RA, Hildrew AG
(
2007
)
.
Landscape, habitat characteristics and the genetic population structure of two caddisflies
.
FRESHWATER BIOL
vol.
52
,
(
10
)
1907
-
1929
.
Breuer J, Quinlivan M, Al Bassam M, Macdonald S, Nichols RA, Steinberg SP, La Russa P, Gershon AA
(
2007
)
.
DNA sequence variability in Oka vaccine isolates
.
J INFECT DIS
vol.
196
,
(
5
)
801
-
802
.
Pulquério MJF, Nichols RA
(
2007
)
.
Dates from the molecular clock: how wrong can we be?
.
Trends Ecol Evol
vol.
22
,
(
4
)
180
-
184
.
Keller I, Bensasson D, Nichols RA
(
2007
)
.
Transition-transversion bias is not universal: a counter example from grasshopper pseudogenes
.
PLoS Genet
vol.
3
,
(
2
)
Quinlivan ML, Gershon AA, Al Bassam MM, Steinberg SP, LaRussa P, Nichols RA, Breuer J
(
2007
)
.
Natural selection for rash-forming genotypes of the varicella-zoster vaccine virus detected within immunized human hosts
.
P NATL ACAD SCI USA
vol.
104
,
(
1
)
208
-
212
.
Szmaragd C, Foster GR, Manica A, Bartholomeusz A, Nichols RA, Balloux F
(
2006
)
.
Genome-wide characterisation of Hepatitis B mutations involved in clinical outcome
.
HEREDITY
vol.
97
,
(
6
)
389
-
397
.
Keller I, Chintauan-Marquier IC, Veltsos P, Nichols RA
(
2006
)
.
Ribosomal DNA in the grasshopper Podisma pedestris: escape from concerted evolution
.
Genetics
vol.
174
,
(
2
)
863
-
874
.
Saccheri IJ, Nichols RA, Brakefield PM
(
2006
)
.
Morphological differentiation following experimental bottlenecks in the butterfly Bicyclus anynana (Nymphalidae)
.
BIOL J LINN SOC
vol.
89
,
(
1
)
107
-
115
.
Quinlivan ML, Gershon AA, Albassam MM, Steinberg SP, IaRussa P, Sharrar RA, Nichols RA, Breuer J
(
2006
)
.
Natural selection of rash-forming genotypes of the varicella vaccine virus within humans
.
JOURNAL OF CLINICAL VIROLOGY
.
vol.
36
,
S23
-
S23
.
Quinlivan MA, Gershon AA, Nichols RA, La Russa P, Steinberg SP, Breuer J
(
2006
)
.
Vaccine Oka varicella-zoster virus genotypes are monomorphic in single vesicles and polymorphic in respiratory tract secretions
.
J INFECT DIS
vol.
193
,
(
7
)
927
-
930
.
Szmaragd C, Nichols RA, Balloux F
(
2006
)
.
A novel approach to characterise pathogen candidate genetic polymorphisms involved in clinical outcome
.
INFECT GENET EVOL
vol.
6
,
(
1
)
38
-
45
.
Szmaragd C, Foster GR, Manica A, Bartholomeusz A, Nichols RA, Balloux F
(
2006
)
.
Hepatitis B virus mutations involved in clinical outcome
.
JOURNAL OF HEPATOLOGY
vol.
44
,
Article
Suppl. 2
,
400
-
400
.
Wilcock HR, Bruford MW, Hildrew AG, Nichols RA
(
2005
)
.
Recruitment, kin and the spatial genetic structure of a caddisfly Plectrocnemia conspersa in a southern English stream
.
FRESHWATER BIOL
vol.
50
,
(
9
)
1499
-
1514
.
Nichols RA
(
2005
)
.
Quantitative genetics focus issue
.
Heredity
vol.
94
,
(
3
)
273
-
274
.
Hewitt GM, NICHOLS RA
(
2005
)
.
Genetic and Evolutionary Impacts of Climate Change
.
Climate Change and Biodiversity
,
Editors:
Lovejoy, TE, Hannah, L
,
Yale University Press
(
New Haven
),
Groombridge JJ, Jones CG, Nichols RA, Carlton M, Bruford MW
(
2004
)
.
Molecular phylogeny and morphological change in the Psittacula parakeets
.
Mol Phylogenet Evol
vol.
31
,
(
1
)
96
-
108
.
Murad L, Bielawski JP, Matyasek R, Kovarík A, Nichols RA, Leitch AR, Lichtenstein CP
(
2004
)
.
The origin and evolution of geminivirus-related DNA sequences in Nicotiana
.
Heredity (Edinb)
vol.
92
,
(
4
)
352
-
358
.
Nichols RA, Freeman KLM
(
2004
)
.
Using molecular markers with high mutation rates to obtain estimates of relative population size and to distinguish the effects of gene flow and mutation: a demonstration using data from endemic Mauritian skinks
.
Mol Ecol
vol.
13
,
(
4
)
775
-
787
.
Overall ADJ, Ahmad M, Thomas MG, Nichols RA
(
2003
)
.
An analysis of consanguinity and social structure within the UK Asian population using microsatellite data
.
Ann Hum Genet
vol.
67
,
(
Pt 6
)
525
-
537
.
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