Publications: Prof John Jones

Stubbington R, Longstaffe O, Sarremejane R, Phillipa B, Gething K, Jones J, Kelly-Quinn M, Laini A et al. ( 2024 ) . A kick in the headwaters: evaluating a macroinvertebrate sampling method for ecological condition monitoring in small streams . River Research and Applications

Sinclair JS, Stubbington R, Schäfer RB, Murphy J, Jones JI, Baresova L, Bonada N, Csabai Z et al. ( 2024 ) . Ecological but not biological traits of European riverine invertebrates respond consistently to anthropogenic impacts . Global Ecology and Biogeography

Foulquier A, Datry T, Corti R, von Schiller D, Tockner K, Stubbington R, Gessner MO, Boyer F et al. ( 2024 ) . Unravelling large-scale patterns and drivers of biodiversity in dry rivers . Nature Communications vol. 15 , ( 1 )

Martínez Rodríguez A, Kratina P, Jones JI ( 2024 ) . Microplastic pollution and nutrient enrichment shift the diet of freshwater macroinvertebrates . Environmental Pollution vol. 359 ,

Welti EAR, Bowler DE, Sinclair JS, Altermatt F, Álvarez-Cabria M, Amatulli G, Angeler DG, Archambaud G et al. ( 2024 ) . Time series of freshwater macroinvertebrate abundances and site characteristics of European streams and rivers . Scientific Data vol. 11 , ( 1 )

Haubrock PJ, Soto I, Jones JI, Murphy J, Cuthbert RN ( 2024 ) . Understanding the complex dynamics of zebra mussel invasions over several decades in European rivers: drivers, impacts and predictions . Oikos Article 2024: e10283 ,

McKenzie M, Brooks A, Callisto M, Collins AL, Durkota JM, Death RG, Jones JI, Linares MS et al. ( 2023 ) . Freshwater invertebrate responses to fine sediment stress: A multi‐continent perspective . Global Change Biology vol. 30 , ( 1 )

Martínez Rodríguez A, Marchant DJ, Francelle P, Kratina P, Jones JI ( 2023 ) . Nutrient enrichment mediates the effect of biodegradable and conventional microplastics on macroinvertebrate communities . Environmental Pollution vol. 337 ,

Hallam J, Clare EL, Jones JI, Day JJ ( 2023 ) . High frequency environmental DNA metabarcoding provides rapid and effective monitoring of fish community dynamics . Environmental DNA vol. 5 , 1623 - 1640 .

Skóra ME, Guðbergsson G, Copp GH, Jones JI ( 2023 ) . Evidence of successful recruitment of non‐native pink salmon Oncorhynchus gorbuscha in Iceland . Journal of Fish Biology vol. 104 , ( 1 ) 329 - 334 .

Nash LN, Kratina P, Recalde FC, Jones JI, Izzo T, Romero GQ ( 2023 ) . Tropical and temperate differences in the trophic structure and aquatic prey use of riparian predators . Ecology Letters

Haase P, Jones JI, Murphy J, Welti EAR ( 2023 ) . The recovery of European freshwater biodiversity has come to a halt . Nature vol. 620 , 582 - 582 .

Haubrock PJ, Carneiro L, Macêdo RL, Balzani P, Soto I, Rasmussen JJ, Wiberg-Larsen P, Csabai Z et al. ( 2023 ) . Advancing our understanding of biological invasions with long-term biomonitoring data . Biological Invasions vol. 25 , ( 11 ) 3637 - 3649 .

Kelly-Quinn M, Biggs J, Jones JI, Riley WD ( 2023 ) . Preface: Small water bodies in the landscape . Hydrobiologia vol. 850 , 3209 - 3210 .

Jones JI, Lloyd CEM, Murphy JF, Arnold A, Duerdoth CP, Hawczak A, Pretty JL, Johnes PJ et al. ( 2023 ) . What do macroinvertebrate indices measure? Stressor‐specific stream macroinvertebrate indices can be confounded by other stressors . Freshwater Biology vol. 68 , ( 8 ) 1330 - 1345 .

Soto I, Cuthbert RN, Ricciardi A, Ahmed DA, Altermatt F, Schäfer RB, Archambaud-Suard G, Bonada N et al. ( 2023 ) . The faunal Ponto-Caspianization of central and western European waterways . Biological Invasions

Marchant D, Martinez Rodriguez A, Francelle P, Jones J, Kratina P ( 2023 ) . Contrasting the effects of microplastic types, concentrations and nutrient enrichment on freshwater communities and ecosystem functioning . Ecotoxicology and Environmental Safety vol. 255 , Article 114834 ,

Gupta A, H. DF, O'Gorman E, Jones I, Woodward G, Petchey OL ( 2023 ) . How many predator guts are required to predict trophic interactions? . Food Webs vol. 34 , Article e00269 , e00269 - e00269 .

Skóra ME, Jones JI, Youngson AF, Robertson S, Wells A, Lauridsen RB, Copp GH ( 2023 ) . Evidence of potential establishment of pink salmon Oncorhynchus gorbuscha in Scotland . Journal of Fish Biology vol. 102 , ( 3 ) 721 - 726 .

Horka P, Musilova Z, Holubova K, Jandova K, Kukla J, Rutkayova J, Jones JI ( 2023 ) . Anthropogenic nutrient loading affects both individual species and the trophic structure of river fish communities . Frontiers in Ecology and Evolution vol. 10 , 1076451 - 1076451 .

Soto I, Ahmed DA, Beidas A, Oficialdegui FJ, Tricarico E, Angeler DG, Amatulli G, Briski E et al. ( 2023 ) . Long-term trends in crayfish invasions across European rivers . Science of the Total Environment vol. 867 ,

Monteith D, Norris D, Murphy J, Jones JI, Juggins S, Shilland E, Battarbee R, Henderson G et al. ( 2022 ) . UK Upland Waters Monitoring Network data interpretation 1988-2019 . UK Centre for Ecology and Hydrology ( https://nora.nerc.ac.uk/id/eprint/534034 ),

Skóra M, Jones J, Copp G, Townhill B ( 2022 ) . Using the stable isotopes to evaluate potential impacts of pink salmon – PinkSIES project .

Kelly-Quinn M, Biggs JN, Brooks S, Fortuño P, Hegarty S, Jones JI, Regan F ( 2022 ) . Opportunities, approaches and challenges to the engagement of citizens in filling small water body data gaps . Hydrobiologia vol. 850 , ( 15 ) 3419 - 3439 .

Marsh JE, Jones JI, Lauridsen RB, Grace JB, Kratina P ( 2022 ) . Direct and indirect influences of macrophyte cover on abundance and growth of juvenile Atlantic salmon . Freshwater Biology

Zhu Y, Jones JI, Collins AL, Zhang Y, Olde L, Rovelli L, Murphy JF, Heppell CM et al. ( 2022 ) . Separating natural from human enhanced methane emissions in headwater streams . Nature Communications vol. 13 , ( 1 )

Milner VS, Jones JI, Maddock IP, Bunting GC ( 2022 ) . The hyporheic zone as an invertebrate refuge during a fine sediment disturbance event . Ecohydrology

Monteith DT, Shilland EM, Norris DA, Keenan P, Jones JI, Millidine K, Murphy J, Pretty J et al. ( 2022 ) . UK Upland Waters Monitoring Network (UKUWMN) Progress Report to Welsh Government and Natural Resources Wales. April 2021 - March 2022. Llyn Llagi, Llyn Cwm Mynach, Afon Hafren and Afon Gwy: Annual Summary .

Marchant DJ, Iwan Jones J, Zemelka G, Eyice O, Kratina P ( 2021 ) . Do microplastics mediate the effects of chemicals on aquatic organisms? . Aquatic Toxicology vol. 242 ,

Marsh JE, Lauridsen RB, Gregory SD, Kratina P, Scott LJ, Cooling D, Jones JI ( 2021 ) . High summer macrophyte cover increases abundance, growth, and feeding of juvenile Atlantic salmon . Ecol Apple02492 - e02492 .

Milner VS, Maddock IP, Jones I, Bunting GC ( 2021 ) . Do legacy effects of deposited fine sediment influence the ecological response of drifting invertebrates to a fine sediment pulse? . Aquatic Sciences vol. 83 , ( 4 )

Hallam J, Clare EL, Jones JI, Day JJ ( 2021 ) . Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods . Environmental DNA

Pacioglu O, Amărioarei A, Duțu LT, Plăvan G, Ițcuș C, Plăvan O, Strungaru Ș-A, Păun A et al. ( 2021 ) . The structure and functionality of communities and food webs in streams along the epigean–hypogean continuum: unifying ecological stoichiometry and metabolic theory of ecology . Aquatic Sciences: research across boundaries vol. 83 , ( 4 ) 63 - 63 .

Shilland EM, Monteith DT, Jones JI, Jungblut AD, Mackay AW ( 2021 ) . Aquatic Macrophyte Change in the UK Upland Waters Monitoring Network . Conference: Natural History Museum Student Conference 2021

Neves MP, Kratina P, Delariva RL, Jones JI, Fialho CB ( 2021 ) . Seasonal feeding plasticity can facilitate coexistence of dominant omnivores in Neotropical streams . Reviews in Fish Biology and Fisheries

Perkins DM, Durance I, Jackson M, Jones JI, Lauridsen RB, Layer-Dobra K, Reiss J, Thompson MSA et al. ( 2021 ) . Systematic variation in food web body-size structure linked to external subsidies . Biology letters vol. 17 , ( 3 ) 20200798 - 20200798 .

Arnold A, Murphy JF, Pretty JL, Duerdoth CP, Smith BD, Rainbow PS, Spencer KL, Collins AL et al. ( 2021 ) . Accumulation of trace metals in freshwater macroinvertebrates across metal contamination gradients . Environmental Pollution vol. 276 , Article 116721 , 116721 - 116721 .

Jones JI, Vdovchenko A, Cooling D, Murphy JF, Arnold A, Pretty JL, Spencer KL, Markus AA et al. ( 2020 ) . Systematic Analysis of the Relative Abundance of Polymers Occurring as Microplastics in Freshwaters and Estuaries . International Journal of Environmental Research and Public Health vol. 17 , ( 24 ) 9304 - 9304 .

Armitage PD, Murphy J, Pretty JL, Davy-Bowker J, Tapia G, Arnold A, Jones JI ( 2020 ) . Faunal community change in the sediment impacted Bovington Stream and the River Frome (Dorset, UK) between 1998 and 2016 . SN Applied Sciences

Wilkes MA, Edwards F, Jones JI, Murphy JF, England J, Friberg N, Hering D, Poff NL et al. ( 2020 ) . Trait‐based ecology at large scales: Assessing functional trait correlations, phylogenetic constraints and spatial variability using open data . Global Change Biology vol. 26 , ( 12 ) 7255 - 7267 .

Jones J, Murphy JF, Arnold A, Pretty J, Spencer K, Markus AA, Vethaak AD ( 2020 ) . Analysis, Prevalence & Impact of Microplastics in Freshwater and Estuarine Environments Evidence Review 2 What are the sources of the microplastics found in freshwater environments? . Defra ( London ), report no. WT15112.ER2 ,

Jones J, Murphy J, Arnold A, Pretty J, Spencer K, Markus AA, Vethaak AD ( 2020 ) . Evidence Reviews on Analysis, Prevalence & Impact of Microplastics in Freshwater and Estuarine Environments Evidence Review 3 What is/are the impact(s) of microplastics on freshwater and estuarine biota? . Defra ( London ), report no. WT15112.ER3 ,

Jones J, Murphy JF, Arnold A, Pretty J, Spencer K, Markus AA, Vethaak AD ( 2020 ) . Evidence Reviews on Analysis, Prevalence & Impact of Microplastics in Freshwater and Estuarine Environments. Evidence Review 1 Are the current sampling and analytical methods scientifically robust and appropriate? . Defra ( Defra, London ), report no. WT15112.ER1 ,

Jones JI, Murphy JF, Arnold A, Pretty JL, Spencer K, Markus AA, Vethaak AD ( 2020 ) . Analysis, prevalence and impact of microplastics in freshwater and estuarine environments: an evidence review .

Makiola A, Compson ZG, Baird DJ, Barnes MA, Boerlijst SP, Bouchez A, Brennan G, Bush A et al. ( 2020 ) . Key Questions for Next-Generation Biomonitoring . Frontiers in Environmental Science vol. 7 ,

Shilland EM, Monteith DT, Jones JI, Jungblut AD, Mackay AW ( 2020 ) . Aquatic Macrophyte Change in the UK Upland Waters Monitoring Network . Conference: Natural History Museum, London. PhD Student Conference. 2nd/3rd March 2020. Poster presentation.

Shilland EM, Monteith DT, Jones JI, Jungblut AD, Mackay AW ( 2020 ) . What has driven long-term aquatic plant change in upland lakes and streams? Do plant eDNA and sediment DNA match known assemblages and historical change? . Conference: Engaging Sustainability. NERC Joint DTP Conference. 7th/8th September 2020. Poster presentation.

Marsh JE, Lauridsen RB, Gregory SD, Beaumont WRC, Scott LJ, Kratina P, Jones JI ( 2019 ) . Above parr: Lowland river habitat characteristics associated with higher juvenile Atlantic salmon (Salmo salar) and brown trout (S. trutta) densities . Ecology of Freshwater Fish

Pacioglu O, Theissinger K, Alexa A, Samoilă C, Sîrbu OI, Schrimpf A, Zubrod JP, Schulz R et al. ( 2019 ) . Multifaceted implications of the competition between native and invasive crayfish: a glimmer of hope for the native’s long-term survival . Biological Invasions

JONES JI, Spencer K, Rainbow PS, Collins AL, Murphy J, Arnold A, Duerdoth CP, Pretty JL et al. ( 2019 ) . The Ecological Impacts of Contaminated Sediment from Abandoned Metal Mines . Department for Environment, Food and Rural Affairs ( London, UK ), report no. WT0970 ,

Blackman R, Mächler E, Altermatt F, Arnold A, Beja P, Boets P, Egeter B, Elbrecht V et al. ( 2019 ) . Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring – the need for calibration experiments . Metabarcoding and Metagenomics vol. 3 ,

Pacioglu O, Zubrod JP, Schulz R, Jones JI, Pârvulescu L ( 2019 ) . Two is better than one: combining gut content and stable isotope analyses to infer trophic interactions between native and invasive species . Hydrobiologia

JONES JI, MURPHY JF, Collins AL, SPENCER KL, RAINBOW PS, ARNOLD A, PRETTY J, Moorhouse AML et al. ( 2019 ) . The Impact of Metal-Rich Sediments Derived from Mining on Freshwater Stream Life . Reviews of Environmental Contamination and Toxicology vol. 247 , 1 - 79 .

Wilkes M, Gittins J, Mathers K, Mason R, Casas-Mulet R, Vanzo D, Mckenzie M, Murray-Bligh J et al. ( 2018 ) . Physical and biological controls on fine sediment transport and storage in rivers . WIREs Water Article 2018;e1331 ,

Riley WD, Potter ECE, Biggs J, Collins AL, Jarvie HP, Jones JI, Kelly-Quinn M, Ormerod SJ et al. ( 2018 ) . Small Water Bodies in Great Britain and Ireland: Ecosystem function, human-generated degradation, and options for restorative action . Science of the Total Environment vol. 645 , 1598 - 1616 .

Perkins DM, Durance I, Edwards FK, Grey J, Hildrew AG, Jackson M, Jones JI, Lauridsen RB et al. ( 2018 ) . Bending the rules: exploitation of allochthonous resources by a top-predator modifies size-abundance scaling in stream food webs . Ecol Lett

Lloyd CEM, Johnes PJ, Freer JE, Carswell AM, Jones JI, Stirling MW, Hodgkinson RA, Richmond C et al. ( 2018 ) . Determining the sources of nutrient flux to water in headwater catchments: Examining the speciation balance to inform the targeting of mitigation measures . Science of the Total Environment vol. 648 , 1179 - 1200 .

Datry T, Foulquier A, Corti R, von Schiller D, Tockner K, Mendoza-Lera C, Clément JC, Gessner MO et al. ( 2018 ) . Author Correction: A global analysis of terrestrial plant litter dynamics in non-perennial waterways . Nature Geoscience1 - 1 .

Pawlowski J, Kelly-Quinn M, Altermatt F, Apotheloz-Perret-Gentil L, Beja P, Boggero A, Borja A, Bouchez A et al. ( 2018 ) . The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems . SCIENCE OF THE TOTAL ENVIRONMENT vol. 637 , 1295 - 1310 .

Datry T, Foulquier A, Corti R, von Schiller D, Tockner K, Mendoza-Lera C, Clément JC, Gessner MO et al. ( 2018 ) . A global analysis of terrestrial plant litter dynamics in non-perennial waterways . Nature Geoscience1 - 7 .

Hering D, Borja A, JONES JI, Pont D, Boets P, Bouchez A, Bruce K, Drakare S et al. ( 2018 ) . Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive . Water Research

Inman A, Winter M, Wheeler R, Vrain E, Lovett A, Collins A, JONES JI, Johnes P et al. ( 2017 ) . An exploration of individual, social and material factors influencing water pollution mitigation behaviours within the farming community . Land Use Policy vol. 70 , 16 - 26 .

Sear DA, Pattison I, Collins AL, Smallman DJ, Jones JI, Naden PS ( 2017 ) . The magnitude and significance of sediment oxygen demand in gravel spawning beds for the incubation of salmonid embryos . River Research and Applications

MURPHY JF, Jones JI, Arnold A, Duerdoth CP, Pretty JL, Naden PS, Sear DA, Collins AL ( 2017 ) . Can macroinvertebrate biological traits indicate fine‐grained sediment conditions in streams? . River Research and Applications

Collins AL, Zhang Y, Freer J, JONES JI, Johnes P, Inman A ( 2017 ) . The potential benefits of on-farm mitigation scenarios for reducing multiple pollutant loadings in prioritised agri-environment areas across England . Environmental Science and Policy

Zhang Y, Collins AL, Johnes PJ, Jones JI ( 2017 ) . Projected impacts of increased uptake of source control mitigation measures on agricultural diffuse pollution emissions to water and air . Land Use Policy vol. 62 , 185 - 201 .

Jones JI, Douthwright TA, Arnold A, Duerdoth CP, MURPHY JF, Edwards FK, Pretty JL ( 2017 ) . Diatoms As Indicators Of Fine Sediment Stress . Ecohydrology

Leese F, Altermatt F, Bouchez A, Ekrem T, Hering D, Meissner K, Mergen P, Pawlowski J et al. ( 2016 ) . DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe . Research Ideas and Outcomes vol. 2 , e11321 - e11321 .

Jones JI, Murphy JF, Anthony SG, Arnold A, Blackburn JH, Duerdoth CP, Hawczak A, Hughes GO et al. ( 2016 ) . Do agri-environment schemes result in improved water quality? . Journal of Applied Ecology

Nichols SJ, Barmuta LA, Chessman BC, Davies PE, Dyer FJ, Harrison ET, Hawkins CP, Jones I et al. ( 2016 ) . The imperative need for nationally coordinated bioassessment of rivers and streams . Marine and Freshwater Research vol. 68 , ( 4 ) 599 - 599 .

Growns I, Murphy JF, Jones JI ( 2016 ) . The effects of altered flow and bed sediment on macroinvertebrates in stream mesocosms . Marine and Freshwater Research vol. 68 , ( 3 ) 496 - 505 .

Frame JL, Jones JI, Ormerod SJ, Sadler JP, Ledger ME ( 2016 ) . Biological barriers to restoration: testing the biotic resistance hypothesis in an upland stream recovering from acidification . Hydrobiologia vol. 777 , ( 1 ) 161 - 170 .

Goodwin JCA, Andrew King R, Iwan Jones J, Ibbotson A, Stevens JR ( 2016 ) . A small number of anadromous females drive reproduction in a brown trout ( Salmo trutta ) population in an English chalk stream . Freshwater Biology vol. 61 , ( 7 ) 1075 - 1089 .

Naura M, Hornby DD, Collins AL, Sear DA, Hill C, Jones JI, Naden PS ( 2016 ) . Mapping the combined risk of agricultural fine sediment input and accumulation for riverine ecosystems across England and Wales . Ecological Indicators vol. 70 , 209 - 221 .

Naden PS, Murphy JF, Old GH, Newman J, Scarlett P, Harman M, Duerdoth CP, Hawczak A et al. ( 2016 ) . Understanding the controls on deposited fine sediment in the streams of agricultural catchments . The Science of The Total Environment vol. 547 , 366 - 381 .

Collins AL, Zhang YS, Winter M, Inman A, Jones JI, Johnes PJ, Cleasby W, Vrain E et al. ( 2016 ) . Tackling agricultural diffuse pollution: What might uptake of farmer-preferred measures deliver for emissions to water and air? . The Science of The Total Environment vol. 547 , 269 - 281 .

Sear DA, Jones JI, Collins AL, Hulin A, Burke N, Bateman S, Pattison I, Naden PS ( 2015 ) . Does fine sediment source as well as quantity affect salmonid embryo mortality and development? . The Science of The Total Environment vol. 541 , 957 - 968 .

Murphy JF, Jones JI, Pretty JL, Duerdoth CP, Hawczak A, Arnold A, Blackburn JH, Naden PS et al. ( 2015 ) . Development of a biotic index using stream macroinvertebrates to assess stress from deposited fine sediment . Freshwater Biology vol. 60 , ( 10 ) 2019 - 2036 .

Murphy JF, Jones JI, Pretty JL, Duerdoth CP, Hawczak A, Arnold A, Blackburn JH, Naden PS et al. ( 2015 ) . Development of a biotic index using stream macroinvertebrates to assess stress from deposited fine sediment . Freshwater Biology vol. 60 , ( 10 ) 2019 - 2036 .

Jones I, Growns I, Arnold A, McCall S, Bowes M ( 2015 ) . The effects of increased flow and fine sediment on hyporheic invertebrates and nutrients in stream mesocosms . Freshwater Biology vol. 60 , ( 4 ) 813 - 826 .

Pattison I, Sear DA, Collins AL, Jones JI, Naden PS . Interactions between fine-grained sediment delivery, river bed deposition and salmonid spawning success . Proceedings of the International Association of Hydrological Sciences . vol. 367 , 199 - 206 .

Johns T, Jones JI, Knight L, Maurice L, Wood P, Robertson A ( 2015 ) . Regional-scale drivers of groundwater faunal distributions . Freshwater Science vol. 34 , ( 1 ) 316 - 328 .

Duerdoth CP, Arnold A, Murphy JF, Naden PS, Scarlett P, Collins AL, Sear DA, JONES JI ( 2014 ) . Assessment of a rapid method for quantitative reach-scale estimates of deposited fine sediment in rivers . Geomorphology vol. 230 , 37 - 50 .

Lauridsen RB, Edwards FK, Cross WF, Woodward G, Hildrew AG, Jones JI ( 2014 ) . Consequences of inferring diet from feeding guilds when estimating and interpreting consumer-resource stoichiometry . FRESHWATER BIOLOGY vol. 59 , ( 7 ) 1497 - 1508 .

Sear DA, Pattison I, Collins AL, Newson MD, Jones JI, Naden PS, Carling PA ( 2014 ) . Factors controlling the temporal variability in dissolved oxygen regime of salmon spawning gravels . HYDROLOGICAL PROCESSES vol. 28 , ( 1 ) 86 - 103 .

Lloyd CEM, Freer JE, Collins AL, Johnes PJ, Jones JI ( 2014 ) . Methods for detecting change in hydrochemical time series in response to targeted pollutant mitigation in river catchments . JOURNAL OF HYDROLOGY vol. 514 , 297 - 312 .

Collins AL, Williams LJ, Zhang YS, Marius M, Dungait JAJ, Smallman DJ, Dixon ER, Stringfellow A et al. ( 2014 ) . Sources of sediment-bound organic matter infiltrating spawning gravels during the incubation and emergence life stages of salmonids . AGRICULTURE ECOSYSTEMS & ENVIRONMENT vol. 196 , 76 - 93 .

Collins AL, Williams LJ, Zhang YS, Marius M, Dungait JAJ, Smallman DJ, Dixon ER, Stringfellow A et al. ( 2013 ) . Catchment source contributions to the sediment-bound organic matter degrading salmonid spawning gravels in a lowland river, southern England . SCIENCE OF THE TOTAL ENVIRONMENT vol. 456 , 181 - 195 .

JONES JI, Duerdoth CP, Collins AL, Naden PS, Sear DA ( 2012 ) . Interactions between diatoms and fine sediment . Hydrological Processes vol. 28 , ( 3 ) 1226 - 1237 .

Collins AL, Foster I, Zhang Y, Gooday R, Lee D, Sear D, Naden P, Jones I ( 2012 ) . Assessing "modern background sediment delivery to rivers" across England and Wales and its use for catchment management . IAHS-AISH Publication . vol. 356 , 125 - 131 .

JONES JI ( 2012 ) . Contribution of the Welsh agri-environment schemes to the maintenance and improvement of soil and water quality, and to the mitigation of climate change. Welsh Government, Agri-Environment Monitoring and Technical Services Contract Lot 3: Soil, Water and Climate Change (Ecosystems), No. 183/2007/08, Final Report .

Lauridsen RB, Edwards FK, Bowes MJ, Woodward G, Hildrew AG, Ibbotson AT, Jones JI ( 2012 ) . Consumer-resource elemental imbalances in a nutrient rich stream . Freshwater Science vol. 31 , ( 2 ) 408 - 422 .

Jones JI, Collins AL, Naden PS, Sear DA ( 2012 ) . THE RELATIONSHIP BETWEEN FINE SEDIMENT AND MACROPHYTES IN RIVERS . RIVER RESEARCH AND APPLICATIONS vol. 28 , ( 7 ) 1006 - 1018 .

Jones I ( 2011 ) . B. R. Moss: Ecology of freshwaters—a view for the twenty-first century (4th edn.) . Journal of Paleolimnology vol. 47 , ( 1 ) 163 - 164 .

JONES JI ( 2011 ) . Advances in Ecological Research . Advances in Ecological Research , Academic Press

Collins AL, Naden PS, Sear DA, Jones JI, Foster IDL, Morrow K ( 2011 ) . Sediment targets for informing river catchment management: international experience and prospects . HYDROL PROCESS vol. 25 , ( 13 ) 2112 - 2129 .

Foster IDL, Collins AL, Naden PS, Sear DA, Jones JI, Zhang Y ( 2011 ) . The potential for paleolimnology to determine historic sediment delivery to rivers . J PALEOLIMNOL vol. 45 , ( 2 ) 287 - 306 .

Yvon-Durocher G, Montoya JM, Woodward G, Jones JI, Trimmer M ( 2011 ) . Warming increases the proportion of primary production emitted as methane from freshwater mesocosms . GLOBAL CHANGE BIOL vol. 17 , ( 2 ) 1225 - 1234 .

Gilljam D, Thierry A, Edwards FK, Figueroa D, Ibbotson AT, JONES JI, Lauridsen RB, Petchey OL et al. ( 2011 ) . Seeing double: size-based versus taxonomic views of food web structure . Advances in Ecological Research vol. 45 , 67 - 133 .

Jones JI, Murphy JF, Collins AL, Sear DA, Naden PS, Armitage PD ( 2011 ) . The impact of fine sediment on macro-invertebrates . River Research and Applications

Kemp P, Sear D, Collins A, Naden P, Jones I ( 2011 ) . The impacts of fine sediment on riverine fish . HYDROLOGICAL PROCESSES vol. 25 , ( 11 ) 1800 - 1821 .

Woodward G, Blanchard J, Lauridsen RB, Edwards FK, Jones JI, Figueroa D, Warren PH, Petchey OL ( 2010 ) . Individual-based food webs. Species identity, body size and sampling effects .

Yvon-Durocher G, Jones JI, Trimmer M, Woodward G, Montoya JM ( 2010 ) . Warming alters the metabolic balance of ecosystems . Philos Trans R Soc Lond B Biol Sci vol. 365 , ( 1549 ) 2117 - 2126 .

Horká P, Ibbotson A, Jones JI, Cove RJ, Scott LJ ( 2010 ) . Validation of scale-age determination in European grayling Thymallus thymallus using tag-recapture analysis . J Fish Biol vol. 77 , ( 1 ) 153 - 161 .

Rawcliffe R, Sayer CD, Woodward G, Grey J, Davidson TA, Jones JI ( 2010 ) . Back to the future: using palaeolimnology to infer long-term changes in shallow lake food webs . FRESHWATER BIOL vol. 55 , ( 3 ) 600 - 613 .

Sayer CD, Davidson TA, Jones JI, Langdon PG ( 2010 ) . Combining contemporary ecology and palaeolimnology to understand shallow lake ecosystem change . FRESHWATER BIOL vol. 55 , ( 3 ) 487 - 499 .

Sayer CD, Davidson TA, Jones JI ( 2010 ) . Seasonal dynamics of macrophytes and phytoplankton in shallow lakes: a eutrophication-driven pathway from plants to plankton? . FRESHWATER BIOL vol. 55 , ( 3 ) 500 - 513 .

Beresford AL, Jones JI ( 2010 ) . Weedbeds and big bugs: the importance of scale in detecting the influence of nutrients and predation on macroinvertebrates in plant-dominated shallow lakes . FRESHWATER BIOL vol. 55 , ( 3 ) 514 - 530 .

Jones JI, Davy-Bowker J, MURPHY JF, Pretty JL ( 2010 ) . Ecological monitoring and assessment of pollution in rivers . Ecology of Inductrial Pollution , Editors: Batty, LC, Hallberg, KB , Edition. 1st , Cambrdige University Press ( Cambridge, UK ),

Woodward G, Blanchard J, Lauridsen RB, Edwards FK, Jones JI, Figueroa D, Warren PH, Petchey OL ( 2010 ) . Chapter 6 Individual-Based Food Webs Species Identity, Body Size and Sampling Effects . Integrative Ecology: From Molecules to Ecosystems , vol. 43 , Elsevier

Woodward G, Blanchard J, Lauridsen RB, Edwards FK, Jones JI, Figueroa D, Warren PH, Petchey OL ( 2010 ) . Individual-Based Food Webs: Species Identity, Body Size and Sampling Effects . ADV ECOL RES vol. 43 , 211 - 266 .

Jones JI, Jeppesen E ( 2009 ) . Body size and trophic cascades in lakes . Body Size: The Structure and Function of Aquatic Ecosystems , Cambridge University Press (CUP)

Johnson AC, Acreman MC, Dunbar MJ, Feist SW, Giacomello AM, Gozlan RE, Hinsley SA, Ibbotson AT et al. ( 2009 ) . The British river of the future: how climate change and human activity might affect two contrasting river ecosystems in England . Sci Total Environ vol. 407 , ( 17 ) 4787 - 4798 .

Editor ( 2009 ) . Erratum . Fundamental and Applied Limnology / Archiv für Hydrobiologie vol. 174 , ( 4 ) 369 - 369 .

Kuliskova P, Horky P, Slavik O, Jones JI ( 2009 ) . Factors influencing movement behaviour and home range size in ide Leuciscus idus . J FISH BIOL vol. 74 , ( 6 ) 1269 - 1279 .

Ings TC, Montoya JM, Bascompte J, Blüthgen N, Brown L, Dormann CF, Edwards F, Figueroa D et al. ( 2009 ) . Ecological networks--beyond food webs . J Anim Ecol vol. 78 , ( 1 ) 253 - 269 .

Edwards FK, Lauridsen RB, Armand L, Vincent HM, Jones JI ( 2009 ) . The relationship between length, mass and preservation time for three species of freshwater leeches (Hirudinea) . FUND APPL LIMNOL vol. 173 , ( 4 ) 321 - 327 .

NEALE MW, DUNBAR MJ, JONES JI, IBBOTSON AT ( 2008 ) . A comparison of the relative contributions of temporal and spatial variation in the density of drifting invertebrates in a Dorset (UK) chalk stream . FRESHWATER BIOLOGY vol. 53 , ( 8 ) 1513 - 1523 .

Edwards FK, Lauridsen RB, Duerdoth CR, Jones JI ( 2008 ) . Dry and ash-free dry mass to length relationships of bullhead (Cottus gobio L.) . FUND APPL LIMNOL vol. 172 , ( 4 ) 315 - 316 .

Kibriya S, Jones JI ( 2007 ) . Nutrient availability and the carnivorous habit in Utricularia vulgaris . FRESHWATER BIOL vol. 52 , ( 3 ) 500 - 509 .

Sayer CD, Hoare DJ, Simpson GL, Henderson ACG, Liptrot ER, Jackson MJ, Appleby PG, Boyle JF et al. ( 2006 ) . TBT causes regime shift in shallow lakes . Environ Sci Technol vol. 40 , ( 17 ) 5269 - 5275 .

Sayer CD, Hoare DJ, Simpson GL, Henderson ACG, Liptrot ER, Jackson MJ, Appleby PG, Boyle JF et al. ( 2006 ) . TBT Causes Regime Shift in Shallow Lakes . Environmental Science and Technology vol. 40 , ( 17 ) 5269 - 5275 .

Hilton J, O'Hare M, Bowes MJ, Jones JI ( 2006 ) . How green is my river? A new paradigm of eutrophication in rivers . Sci Total Environ vol. 365 , ( 1-3 ) 66 - 83 .

Burks RL, Mulderij G, Gross E, Jones I, Jacobsen L, Jeppesen E, Van Donk E ( 2006 ) . Center stage: The crucial role of macrophytes in regulating trophic interactions in shallow lake wetlands . WETLANDS: FUNCTIONING, BIODIVERSITY CONSERVATION, AND RESTORATION . vol. 191 , 37 - + .

Jones JI ( 2005 ) . The metabolic cost of bicarbonate use in the submerged plant Elodea nuttallii . AQUAT BOT vol. 83 , ( 1 ) 71 - 81 .

Berlow EL, Neutel AM, Cohen JE, de Ruiter PC, Ebenman B, Emmerson M, Fox JW, Jansen VAA et al. ( 2004 ) . Interaction strengths in food webs: issues and opportunities . J ANIM ECOL vol. 73 , ( 3 ) 585 - 598 .

Jones I ( 2004 ) . Tarns of the Central Lake District . Freshwater Biology vol. 49 , ( 5 ) 678 - 678 .

Jones JI, Li W, Maberly SC ( 2003 ) . Area, altitude and aquatic plant diversity . ECOGRAPHY vol. 26 , ( 4 ) 411 - 420 .

Jones JI, Waldron S ( 2003 ) . Combined stable isotope and gut contents analysis of food webs in plant-dominated, shallow lakes . FRESHWATER BIOL vol. 48 , ( 8 ) 1396 - 1407 .

Jones JI, Sayer CD ( 2003 ) . Does the fish-invertebrate-periphyton cascade precipitate plant loss in shallow lakes? . ECOLOGY vol. 84 , ( 8 ) 2155 - 2167 .

Gjerlov C, Hildrew AG, Jones JI ( 2003 ) . Mobility of stream invertebrates in relation to disturbance and refugia: a test of habitat templet theory . J N AM BENTHOL SOC vol. 22 , ( 2 ) 207 - 223 .

Woodward G, Jones JI, Hildrew AG ( 2002 ) . Community persistence in Broadstone Stream (UK) over three decades . FRESHWATER BIOL vol. 47 , ( 8 ) 1419 - 1435 .

Jones JI, Young JO, Eaton JW, Moss B ( 2002 ) . The influence of nutrient loading, dissolved inorganic carbon and higher trophic levels on the interaction between submerged plants and periphyton . J ECOL vol. 90 , ( 1 ) 12 - 24 .

JONES J, MOSS B, EATON J, HAYNES G, HARDWICK K ( 2000 ) . Plants and their periphyton - analysis of a relationship . Conference: 27th Congress of the International Association of Theoretical and Applied Limnology ( Dublin, Ireland ) from: 08/1998 to: 08/1998 ,

Jones JI, Eaton JW, Hardwick K ( 2000 ) . The influence of periphyton on boundary layer conditions: a pH microelectrode investigation . AQUAT BOT vol. 67 , ( 3 ) 191 - 206 .

Wan Jones JI ( 2000 ) . Do submerged aquatic plants influence periphyton community composition for the benefit of invertebrate mutualists? . Freshwater Biology vol. 43 , ( 4 )

Jones JI, Eaton JW, Hardwick K ( 2000 ) . The effect of changing environmental variables in the surrounding water on the physiology of Elodea nuttallii . AQUAT BOT vol. 66 , ( 2 ) 115 - 129 .

Jones IJ, Moss B, Eaton JW, Young JO ( 2000 ) . Do submerged aquatic plants influence periphyton community composition for the benefit of invertebrate mutualists? . FRESHWATER BIOLOGY vol. 43 , ( 4 ) 591 - 604 .

Jones JI, Young JO, Haynes GM, Moss B, Eaton JW, Hardwick KJ ( 1999 ) . Do submerged aquatic plants influence their periphyton to enhance the growth and reproduction of invertebrate mutualists? . OECOLOGIA vol. 120 , ( 3 ) 463 - 474 .

Jones JI, Moss B, Young JO ( 1998 ) . Interactions between Periphyton, Nonmolluscan Invertebrates, and Fish in Standing Freshwaters . The Structuring Role of Submerged Macrophytes in Lakes , vol. 131 , Springer Nature

Jones JI, Eaton JW, Hardwick K, Moss B, Young JO ( 1998 ) . Plants and snails; Mutualism or merely coexistence? . INTERNATIONAL ASSOCIATION OF THEORETICAL AND APPLIED LIMNOLOGY, VOL 26, PT 4 . vol. 26 , 2082 - 2082 .

Jones JI, Hardwick K, Eaton JW ( 1996 ) . Diurnal carbon restrictions on the photosynthesis of dense stands of Elodea nuttallii (Planch.) St. John . Hydrobiologia . vol. 340 , 11 - 16 .

JONES JI, EATON JW, HARDWICK K ( 1993 ) . PHYSIOLOGICAL PLASTICITY IN ELODEA-NUTTALLII (PLANCH) ST-JOHN . JOURNAL OF AQUATIC PLANT MANAGEMENT . vol. 31 , 88 - 94 .