Publications: Dr Charalampos Rallis

Islam RA, Rallis C ( 2023 ) . Correction: Islam, R.A.; Rallis, C. Ribosomal Biogenesis and Heterogeneity in Development, Disease, and Aging. Epigenomes 2023, 7, 17 . Epigenomes vol. 7 , ( 4 )

Gal C, Cochrane GA, Morgan BA, Rallis C, Bähler J, Whitehall SK ( 2023 ) . The longevity and reversibility of quiescence in Schizosaccharomyces pombe are dependent upon the HIRA histone chaperone . Cell Cycle vol. 22 , ( 17 ) 1921 - 1936 .

Islam RA, Rallis C ( 2023 ) . Ribosomal Biogenesis and Heterogeneity in Development, Disease, and Aging . Epigenomes vol. 7 , ( 3 )

Alao J-P, Legon L, Dabrowska A, Tricolici A-M, Kumar J, Rallis C ( 2023 ) . Interplays of AMPK and TOR in Autophagy Regulation in Yeast . Cells vol. 12 , ( 4 )

Dabrowska A, Kumar J, Rallis C ( 2022 ) . Nutrient-Response Pathways in Healthspan and Lifespan Regulation . Cells vol. 11 , ( 9 )

Martinez-Miguel VE, Lujan C, Espie--Caullet T, Martinez-Martinez D, Moore S, Backes C, Gonzalez S, Galimov ER et al. ( 2021 ) . Increased fidelity of protein synthesis extends lifespan . Cell Metabolism vol. 33 , ( 11 ) 2288 - 2300.e12 .

Legon L, Rallis C ( 2021 ) . Genome-wide screens in yeast models towards understanding chronological lifespan regulation . Briefings in Functional Genomics vol. 21 , ( 1 ) 4 - 12 .

Alao J-P, Legon L, Rallis C ( 2021 ) . Crosstalk between the mTOR and DNA Damage Response Pathways in Fission Yeast . Cells vol. 10 , ( 2 )

Rallis C, Mülleder M, Smith G, Au YZ, Ralser M, Bähler J ( 2020 ) . Amino Acids Whose Intracellular Levels Change Most During Aging Alter Chronological Life Span of Fission Yeast . The Journals of Gerontology Series A vol. 76 , ( 2 ) 205 - 210 .

Alao JP, Johansson-Sjölander J, Rallis C, Sunnerhagen P ( 2020 ) . Caffeine Stabilises Fission Yeast Wee1 in a Rad24-Dependent Manner but Attenuates Its Expression in Response to DNA Damage . Microorganisms vol. 8 , ( 10 )

Bjedov I, Rallis C ( 2020 ) . The Target of Rapamycin Signalling Pathway in Ageing and Lifespan Regulation . Genes vol. 11 , ( 9 )

Rodríguez-López M, Gonzalez S, Hillson O, Tunnacliffe E, Codlin S, Tallada VA, Bähler J, Rallis C ( 2020 ) . The GATA Transcription Factor Gaf1 Represses tRNAs, Inhibits Growth, and Extends Chronological Lifespan Downstream of Fission Yeast TORC1 . Cell Reports vol. 30 , ( 10 ) 3240 - 3249.e4 .

Pai C-C, Hsu K-F, Durley SC, Keszthelyi A, Kearsey SE, Rallis C, Folkes LK, Deegan R et al. ( 2019 ) . An essential role for dNTP homeostasis following CDK-induced replication stress . Journal of Cell Science vol. 132 , ( 6 )

Hillson O, Gonzalez S, Rallis C ( 2018 ) . Prospects of Pharmacological Interventions to Organismal Aging . BioMolecular Concepts vol. 9 , ( 1 ) 200 - 215 .

Atkinson SR, Marguerat S, Bitton DA, Rodríguez-López M, Rallis C, Lemay J-F, Cotobal C, Malecki M et al. ( 2018 ) . Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast . RNA vol. 24 , ( 9 ) 1195 - 1213 .

Ellis DA, Mustonen V, Rodríguez-López M, Rallis C, Malecki M, Jeffares DC, Bähler J ( 2018 ) . Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells . Genetics vol. 210 , ( 2 )

Hoyos-Manchado R, Reyes-Martín F, Rallis C, Gamero-Estévez E, Rodríguez-Gómez P, Quintero-Blanco J, Bähler J, Jiménez J et al. ( 2017 ) . RNA metabolism is the primary target of formamide in vivo . Scientific Reports vol. 7 , ( 1 )

Rallis C, Townsend S, Bähler J ( 2017 ) . Erratum: Corrigendum: Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes . Scientific Reports vol. 7 , ( 1 )

Rallis C, Townsend S, Bähler J ( 2017 ) . Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes . Scientific Reports vol. 7 , ( 1 )

Jeffares DC, Jolly C, Hoti M, Speed D, Shaw L, Rallis C, Balloux F, Dessimoz C et al. ( 2017 ) . Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast . Nature Communications vol. 8 , ( 1 )

Gonzalez S, Rallis C ( 2017 ) . The TOR Signaling Pathway in Spatial and Temporal Control of Cell Size and Growth . Switzerland , vol. 5 , Abstract: java.sql.Clob org.hibernate.engine.jdbc.WrappedClob java.io.Serializable ,

Malecki M, Bitton DA, Rodríguez-López M, Rallis C, Calavia NG, Smith GC, Bähler J ( 2016 ) . Functional and regulatory profiling of energy metabolism in fission yeast . Genome Biology vol. 17 , ( 1 )

Brault A, Rallis C, Normant V, Garant J-M, Bähler J, Labbé S ( 2016 ) . Php4 Is a Key Player for Iron Economy in Meiotic and Sporulating Cells . G3: Genes, Genomes, Genetics vol. 6 , ( 10 ) 3077 - 3095 .

Bischof L, Pevorovsk M, Rallis C, Jeffares DC, Arzhaeva Y, Bhler J ( 2016 ) . Spotsizer: High-throughput quantitative analysis of microbial growth . BioTechniques vol. 61 , ( 4 ) 191 - 201 .

Vishwanatha A, Rallis C, Subramanyaswamy SB, D'Souza CJM, Bähler J, Schweingruber ME ( 2016 ) . Identification of nuclear genes affecting 2-Deoxyglucose resistance in Schizosaccharomyces pombe . FEMS Yeast Research vol. 16 , ( 6 )

Tomalin LE, Day AM, Underwood ZE, Smith GR, Pezze PD, Rallis C, Patel W, Dickinson BC et al. ( 2016 ) . Increasing extracellular H2O2 produces a bi-phasic response in intracellular H2O2, with peroxiredoxin hyperoxidation only triggered once the cellular H2O2-buffering capacity is overwhelmed . Free Radical Biology and Medicine vol. 95 , 333 - 348 .

Bond ME, Brown R, Rallis C, Bähler J, Mole SE ( 2015 ) . A central role for TOR signalling in a yeast model for juvenile CLN3 disease . Microbial Cell vol. 2 , ( 12 )

Rallis C, Bähler J ( 2015 ) . Cell-based screens and phenomics with fission yeast . Critical Reviews in Biochemistry and Molecular Biology vol. 51 , ( 2 ) 86 - 95 .

Bitton DA, Atkinson SR, Rallis C, Smith GC, Ellis DA, Chen YYC, Malecki M, Codlin S et al. ( 2015 ) . Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast . Genome Research vol. 25 , ( 6 ) 884 - 896 .

Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z et al. ( 2015 ) . The genomic and phenotypic diversity of Schizosaccharomyces pombe . Nature Genetics vol. 47 , ( 3 ) 235 - 241 .

Sideri T, Rallis C, Bitton DA, Lages BM, Suo F, Rodríguez-López M, Du L-L, Bähler J ( 2015 ) . Parallel Profiling of Fission Yeast Deletion Mutants for Proliferation and for Lifespan During Long-Term Quiescence . G3: Genes, Genomes, Genetics vol. 5 , ( 1 ) 145 - 155 .

Sofola-Adesakin O, Castillo-Quan JI, Rallis C, Tain LS, Bjedov I, Rogers I, Li L, Martinez P et al. ( 2014 ) . Lithium suppresses Aβ pathology by inhibiting translation in an adult Drosophila model of Alzheimer's disease . Frontiers in Aging Neuroscience vol. 6 ,

Bitton DA, Rallis C, Jeffares DC, Smith GC, Chen YYC, Codlin S, Marguerat S, Bähler J ( 2014 ) . LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq . Genome Research vol. 24 , ( 7 ) 1169 - 1179 .

Rallis C, López-Maury L, Georgescu T, Pancaldi V, Bähler J ( 2014 ) . Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth . Biology Open vol. 3 , ( 2 ) 161 - 171 .

Rallis C, Bähler J ( 2013 ) . Inhibition of TORC1 signaling and increased lifespan: gained in translation? . Aging vol. 5 , ( 5 ) 335 - 336 .

Rallis C, Codlin S, Bähler J ( 2013 ) . TORC1 signaling inhibition by rapamycin and caffeine affect lifespan, global gene expression, and cell proliferation of fission yeast . Aging Cell vol. 12 , ( 4 ) 563 - 573 .

Pancaldi V, Saraç ÖS, Rallis C, McLean JR, Převorovský M, Gould K, Beyer A, Bähler J ( 2012 ) . Predicting the Fission Yeast Protein Interaction Network . G3: Genes, Genomes, Genetics vol. 2 , ( 4 ) 453 - 467 .

Převorovský M, Rallis C ( 2011 ) . Bright days for yeast research . Genome Biology . vol. 12 ,

Rallis C, Pinchin SM, Ish-Horowicz D ( 2010 ) . Cell-autonomous integrin control of Wnt and Notch signalling during somitogenesis . Development vol. 137 , ( 21 ) 3591 - 3601 .

Maydan M, McDonald PC, Sanghera J, Yan J, Rallis C, Pinchin S, Hannigan GE, Foster LJ et al. ( 2010 ) . Integrin-Linked Kinase Is a Functional Mn2+-Dependent Protein Kinase that Regulates Glycogen Synthase Kinase-3β (GSK-3β) Phosphorylation . PLOS ONE vol. 5 , ( 8 )

Rallis C ( 2009 ) . New tricks for an old-favorite model . Genome Biology . vol. 10 ,

Hanisch A, Vezzaro A, Rallis C ( 2008 ) . Elucidating developmental gene networks . Genome Biology . vol. 9 ,

Bazigou E, Rallis C ( 2007 ) . Cell signaling and cancer . Genome Biology . vol. 8 ,

Rallis C ( 2007 ) . Chickens get their place in the sun . Genome Biology . vol. 8 ,

Rallis C ( 2006 ) . Developmental genomics reaches new heights . Genome Biology . vol. 7 ,

Rallis C, Del Buono J, Logan MPO ( 2005 ) . Tbx3 can alter limb position along the rostrocaudal axis of the developing embryo . Development vol. 132 , ( 8 ) 1961 - 1970 .

Rallis C, Bruneau BG, Del Buono J, Seidman CE, Seidman JG, Nissim S, Tabin CJ, Logan MPO ( 2003 ) . Tbx5 is required for forelimb bud formation and continued outgrowth . Development vol. 130 , ( 12 ) 2741 - 2751 .

Rallis C, Stamataki D, Pontikakis S, Mankoo BS, Karagogeos D ( 2001 ) . Isolation of the avian homologue of the homeobox gene Mox2 and analysis of its expression pattern in developing somites and limbs . Cells and Development vol. 104 , ( 1-2 ) 121 - 124 .